Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q66


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Q66 entry

There are 2 chains in PDB entry 8Q66 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 628ARG 898
B
 ILE 326LEU 567
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8Q66. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
636 640Right-handed 310
Helix 2
AA2
A
641 650Right-handed alpha
Helix 3
AA3
A
661 664Right-handed 310
Helix 4
AA4
A
673 683Right-handed alpha
Helix 5
AA5
A
692 707Right-handed alpha
Helix 6
AA6
A
708 711Right-handed 310
Helix 7
AA7
A
719 730Right-handed alpha
Helix 8
AA8
A
743 755Right-handed alpha
Helix 9
AA9
A
781 792Right-handed alpha
Helix 10
AB1
A
792 798Right-handed alpha
Helix 11
AB2
A
807 817Right-handed alpha
Helix 12
AB3
A
818 823Right-handed 310
Helix 13
AB4
A
868 872Right-handed 310
Helix 14
AB5
A
873 879Right-handed 310
Helix 15
AB6
B
328 332Right-handed 310
Helix 16
AB7
B
346 350Right-handed 310
Helix 17
AB8
B
352 360Right-handed alpha
Helix 18
AB9
B
424 430Right-handed 310
Helix 19
AC1
B
446 459Right-handed alpha
Helix 20
AC2
B
512 516Right-handed alpha
Helix 21
AC3
B
517 519Right-handed 310
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There are 7 sheets in PDB entry 8Q66. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
686 688first strand
Strand 2
A
666 669parallel
Strand 3
A
713 716parallel
Strand 4
A
733 735parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
776 780first strand
Strand 2
A
883 887anti-parallel
Strand 3
A
893 895anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
829 831first strand
Strand 2
A
841 844anti-parallel
Strand 3
A
847 850anti-parallel
Strand 4
A
855 858anti-parallel
Strand 5
A
865 866anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
368 378first strand
Strand 2
B
381 385anti-parallel
Strand 3
B
394 397anti-parallel
Strand 4
B
437 442parallel
Strand 5
B
413 420anti-parallel
Strand 6
B
368 378anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
460 463first strand
Strand 2
B
466 473anti-parallel
Strand 3
B
527 539anti-parallel
Strand 4
B
542 545anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
460 463first strand
Strand 2
B
466 473anti-parallel
Strand 3
B
527 539anti-parallel
Strand 4
B
552 556anti-parallel
Strand 5
B
561 563anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
482 486first strand
Strand 2
B
496 501anti-parallel
Strand 3
B
507 511anti-parallel
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