Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q67

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Q67 entry

There are 6 chains in PDB entry 8Q67 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 7	LEU 597
B	GLN 5	LEU 597
C	SER 8	THR 596
D	THR 6	THR 596
E	THR 6	ALA 598
F	GLN 4	VAL 599

There are132 helices in PDB entry 8Q67. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	32	Right-handed alpha
Helix 2	AA2	A	42	49	Right-handed alpha
Helix 3	AA3	A	49	59	Right-handed alpha
Helix 4	AA4	A	59	75	Right-handed alpha
Helix 5	AA5	A	98	102	Right-handed 310
Helix 6	AA6	A	103	107	Right-handed 310
Helix 7	AA7	A	166	169	Right-handed 310
Helix 8	AA8	A	182	186	Right-handed 310
Helix 9	AA9	A	202	204	Right-handed 310
Helix 10	AB1	A	251	255	Right-handed 310
Helix 11	AB2	A	258	271	Right-handed alpha
Helix 12	AB3	A	273	281	Right-handed alpha
Helix 13	AB4	A	289	302	Right-handed alpha
Helix 14	AB5	A	330	342	Right-handed alpha
Helix 15	AB6	A	368	372	Right-handed 310
Helix 16	AB7	A	391	395	Right-handed 310
Helix 17	AB8	A	396	409	Right-handed alpha
Helix 18	AB9	A	446	450	Right-handed 310
Helix 19	AC1	A	453	458	Right-handed alpha
Helix 20	AC2	A	471	495	Right-handed alpha
Helix 21	AC3	A	508	523	Right-handed alpha
Helix 22	AC4	A	528	544	Right-handed alpha
Helix 23	AC5	A	556	573	Right-handed alpha
Helix 24	AC6	A	579	596	Right-handed alpha
Helix 25	AC7	B	6	32	Right-handed alpha
Helix 26	AC8	B	42	49	Right-handed alpha
Helix 27	AC9	B	49	59	Right-handed alpha
Helix 28	AD1	B	59	74	Right-handed alpha
Helix 29	AD2	B	103	107	Right-handed 310
Helix 30	AD3	B	202	204	Right-handed 310
Helix 31	AD4	B	251	255	Right-handed 310
Helix 32	AD5	B	258	270	Right-handed alpha
Helix 33	AD6	B	273	281	Right-handed alpha
Helix 34	AD7	B	289	302	Right-handed alpha
Helix 35	AD8	B	330	342	Right-handed alpha
Helix 36	AD9	B	377	382	Right-handed alpha
Helix 37	AE1	B	391	395	Right-handed 310
Helix 38	AE2	B	396	409	Right-handed alpha
Helix 39	AE3	B	453	460	Right-handed alpha
Helix 40	AE4	B	471	495	Right-handed alpha
Helix 41	AE5	B	508	523	Right-handed alpha
Helix 42	AE6	B	528	546	Right-handed alpha
Helix 43	AE7	B	556	573	Right-handed alpha
Helix 44	AE8	B	579	596	Right-handed alpha
Helix 45	AE9	C	9	20	Right-handed alpha
Helix 46	AF1	C	21	32	Right-handed alpha
Helix 47	AF2	C	42	49	Right-handed alpha
Helix 48	AF3	C	49	59	Right-handed alpha
Helix 49	AF4	C	59	75	Right-handed alpha
Helix 50	AF5	C	98	102	Right-handed 310
Helix 51	AF6	C	103	107	Right-handed 310
Helix 52	AF7	C	166	169	Right-handed 310
Helix 53	AF8	C	202	204	Right-handed 310
Helix 54	AF9	C	258	271	Right-handed alpha
Helix 55	AG1	C	273	282	Right-handed alpha
Helix 56	AG2	C	289	302	Right-handed alpha
Helix 57	AG3	C	330	342	Right-handed alpha
Helix 58	AG4	C	368	372	Right-handed 310
Helix 59	AG5	C	377	382	Right-handed alpha
Helix 60	AG6	C	392	395	Right-handed 310
Helix 61	AG7	C	396	409	Right-handed alpha
Helix 62	AG8	C	445	451	Right-handed 310
Helix 63	AG9	C	453	458	Right-handed alpha
Helix 64	AH1	C	471	494	Right-handed alpha
Helix 65	AH2	C	508	523	Right-handed alpha
Helix 66	AH3	C	528	544	Right-handed alpha
Helix 67	AH4	C	555	573	Right-handed alpha
Helix 68	AH5	C	579	596	Right-handed alpha
Helix 69	AH6	D	7	32	Right-handed alpha
Helix 70	AH7	D	41	49	Right-handed alpha
Helix 71	AH8	D	49	59	Right-handed alpha
Helix 72	AH9	D	59	75	Right-handed alpha
Helix 73	AI1	D	103	107	Right-handed 310
Helix 74	AI2	D	166	169	Right-handed 310
Helix 75	AI3	D	182	186	Right-handed 310
Helix 76	AI4	D	202	204	Right-handed 310
Helix 77	AI5	D	258	271	Right-handed alpha
Helix 78	AI6	D	273	282	Right-handed alpha
Helix 79	AI7	D	289	302	Right-handed alpha
Helix 80	AI8	D	330	342	Right-handed alpha
Helix 81	AI9	D	368	372	Right-handed 310
Helix 82	AJ1	D	377	382	Right-handed alpha
Helix 83	AJ2	D	391	395	Right-handed 310
Helix 84	AJ3	D	396	409	Right-handed alpha
Helix 85	AJ4	D	453	458	Right-handed alpha
Helix 86	AJ5	D	471	495	Right-handed alpha
Helix 87	AJ6	D	508	523	Right-handed alpha
Helix 88	AJ7	D	528	544	Right-handed alpha
Helix 89	AJ8	D	556	573	Right-handed alpha
Helix 90	AJ9	D	579	596	Right-handed alpha
Helix 91	AK1	E	7	32	Right-handed alpha
Helix 92	AK2	E	42	49	Right-handed alpha
Helix 93	AK3	E	49	59	Right-handed alpha
Helix 94	AK4	E	59	74	Right-handed alpha
Helix 95	AK5	E	103	107	Right-handed 310
Helix 96	AK6	E	166	169	Right-handed 310
Helix 97	AK7	E	182	186	Right-handed 310
Helix 98	AK8	E	202	204	Right-handed 310
Helix 99	AK9	E	258	271	Right-handed alpha
Helix 100	AL1	E	273	281	Right-handed alpha
Helix 101	AL2	E	289	302	Right-handed alpha
Helix 102	AL3	E	330	342	Right-handed alpha
Helix 103	AL4	E	368	372	Right-handed 310
Helix 104	AL5	E	391	395	Right-handed 310
Helix 105	AL6	E	396	409	Right-handed alpha
Helix 106	AL7	E	445	450	Right-handed alpha
Helix 107	AL8	E	453	459	Right-handed alpha
Helix 108	AL9	E	471	495	Right-handed alpha
Helix 109	AM1	E	508	523	Right-handed alpha
Helix 110	AM2	E	528	545	Right-handed alpha
Helix 111	AM3	E	556	573	Right-handed alpha
Helix 112	AM4	E	580	598	Right-handed alpha
Helix 113	AM5	F	5	32	Right-handed alpha
Helix 114	AM6	F	42	49	Right-handed alpha
Helix 115	AM7	F	49	59	Right-handed alpha
Helix 116	AM8	F	59	75	Right-handed alpha
Helix 117	AM9	F	103	107	Right-handed 310
Helix 118	AN1	F	166	169	Right-handed 310
Helix 119	AN2	F	202	204	Right-handed 310
Helix 120	AN3	F	258	271	Right-handed alpha
Helix 121	AN4	F	273	280	Right-handed alpha
Helix 122	AN5	F	289	302	Right-handed alpha
Helix 123	AN6	F	330	342	Right-handed alpha
Helix 124	AN7	F	391	395	Right-handed 310
Helix 125	AN8	F	396	409	Right-handed alpha
Helix 126	AN9	F	445	450	Right-handed 310
Helix 127	AO1	F	453	458	Right-handed alpha
Helix 128	AO2	F	471	494	Right-handed alpha
Helix 129	AO3	F	508	523	Right-handed alpha
Helix 130	AO4	F	528	544	Right-handed alpha
Helix 131	AO5	F	556	572	Right-handed alpha
Helix 132	AO6	F	579	598	Right-handed alpha

There are 39 sheets in PDB entry 8Q67. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	41	first strand
Strand 2	A	86	90	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	120	first strand
Strand 2	A	174	180	anti-parallel
Strand 3	A	195	200	anti-parallel
Strand 4	A	231	246	parallel
Strand 5	A	212	225	anti-parallel
Strand 6	A	110	120	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	127	first strand
Strand 2	A	171	172	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	144	first strand
Strand 2	A	129	134	anti-parallel
Strand 3	A	162	164	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	349	first strand
Strand 2	A	386	390	parallel
Strand 3	A	428	433	parallel
Strand 4	A	321	325	parallel
Strand 5	A	462	466	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	416	first strand
Strand 2	A	419	424	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	527	first strand
Strand 2	A	577	578	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	41	first strand
Strand 2	B	86	90	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	120	first strand
Strand 2	B	174	180	anti-parallel
Strand 3	B	195	200	anti-parallel
Strand 4	B	231	246	parallel
Strand 5	B	212	225	anti-parallel
Strand 6	B	110	120	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	127	first strand
Strand 2	B	171	172	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	144	first strand
Strand 2	B	129	134	anti-parallel
Strand 3	B	162	164	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	349	first strand
Strand 2	B	386	390	parallel
Strand 3	B	428	433	parallel
Strand 4	B	321	325	parallel
Strand 5	B	462	466	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	411	416	first strand
Strand 2	B	419	424	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	526	527	first strand
Strand 2	B	577	578	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	41	first strand
Strand 2	C	86	90	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	127	first strand
Strand 2	C	171	180	anti-parallel
Strand 3	C	195	200	anti-parallel
Strand 4	C	231	246	parallel
Strand 5	C	212	225	anti-parallel
Strand 6	C	110	120	anti-parallel
Strand 7	C	171	180	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	144	first strand
Strand 2	C	129	134	anti-parallel
Strand 3	C	162	164	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	345	349	first strand
Strand 2	C	386	390	parallel
Strand 3	C	428	433	parallel
Strand 4	C	321	324	parallel
Strand 5	C	462	465	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	411	416	first strand
Strand 2	C	419	424	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	526	527	first strand
Strand 2	C	577	578	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	40	first strand
Strand 2	D	86	89	parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	127	first strand
Strand 2	D	171	180	anti-parallel
Strand 3	D	195	200	anti-parallel
Strand 4	D	231	246	parallel
Strand 5	D	212	225	anti-parallel
Strand 6	D	110	120	anti-parallel
Strand 7	D	171	180	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	140	144	first strand
Strand 2	D	129	134	anti-parallel
Strand 3	D	162	164	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	346	349	first strand
Strand 2	D	386	390	parallel
Strand 3	D	428	433	parallel
Strand 4	D	321	324	parallel
Strand 5	D	462	465	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	411	416	first strand
Strand 2	D	419	424	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	526	527	first strand
Strand 2	D	577	578	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	41	first strand
Strand 2	E	86	90	parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	110	120	first strand
Strand 2	E	174	180	anti-parallel
Strand 3	E	195	200	anti-parallel
Strand 4	E	231	246	parallel
Strand 5	E	212	225	anti-parallel
Strand 6	E	110	120	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	126	127	first strand
Strand 2	E	171	172	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	140	144	first strand
Strand 2	E	129	134	anti-parallel
Strand 3	E	162	164	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	346	349	first strand
Strand 2	E	386	390	parallel
Strand 3	E	428	433	parallel
Strand 4	E	321	324	parallel
Strand 5	E	462	463	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	411	416	first strand
Strand 2	E	419	424	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	41	first strand
Strand 2	F	86	90	parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	110	120	first strand
Strand 2	F	174	180	anti-parallel
Strand 3	F	195	200	anti-parallel
Strand 4	F	231	246	parallel
Strand 5	F	212	225	anti-parallel
Strand 6	F	110	120	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	126	127	first strand
Strand 2	F	171	172	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	140	144	first strand
Strand 2	F	129	134	anti-parallel
Strand 3	F	162	164	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	346	349	first strand
Strand 2	F	386	390	parallel
Strand 3	F	428	433	parallel
Strand 4	F	321	325	parallel
Strand 5	F	462	466	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	411	416	first strand
Strand 2	F	419	424	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	526	527	first strand
Strand 2	F	577	578	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Q67

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q67