Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q6Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Q6Q entry

There are 4 chains in PDB entry 8Q6Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 117
C
 GLN 5LEU 189
B
 MET 1PHE 117
D
 PRO 4GLY 190
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 8Q6Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 8Right-handed alpha
Helix 2
AA2
A
10 25Right-handed alpha
Helix 3
AA3
A
56 68Right-handed alpha
Helix 4
AA4
A
90 99Right-handed alpha
Helix 5
AA5
C
19 29Right-handed alpha
Helix 6
AA6
C
31 35Right-handed 310
Helix 7
AA7
C
67 73Right-handed alpha
Helix 8
AA8
C
93 106Right-handed alpha
Helix 9
AA9
C
123 138Right-handed alpha
Helix 10
AB1
C
159 176Right-handed alpha
Helix 11
AB2
C
177 179Right-handed 310
Helix 12
AB3
B
3 8Right-handed alpha
Helix 13
AB4
B
10 25Right-handed alpha
Helix 14
AB5
B
56 69Right-handed alpha
Helix 15
AB6
B
90 99Right-handed alpha
Helix 16
AB7
D
19 29Right-handed alpha
Helix 17
AB8
D
67 73Right-handed alpha
Helix 18
AB9
D
93 106Right-handed alpha
Helix 19
AC1
D
123 138Right-handed alpha
Helix 20
AC2
D
158 176Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8Q6Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
105 110anti-parallel
Strand 3
A
28 35parallel
Strand 4
A
48 52anti-parallel
Strand 5
C
187 188parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 51first strand
Strand 2
C
56 62anti-parallel
Strand 3
C
8 14parallel
Strand 4
C
77 82parallel
Strand 5
C
110 115parallel
Strand 6
C
144 148parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 52first strand
Strand 2
B
28 35anti-parallel
Strand 3
B
105 110parallel
Strand 4
B
77 79anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
50 51first strand
Strand 2
D
56 62anti-parallel
Strand 3
D
8 14parallel
Strand 4
D
77 82parallel
Strand 5
D
110 115parallel
Strand 6
D
144 148parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il