Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q6R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Q6R entry

There are 6 chains in PDB entry 8Q6R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 1	SER 119
B	GLU 1	HIS 120
C	ASP 28	PRO 134
D	GLY 255	GLU 465
E	ASP 28	PRO 134
F	GLY 255	GLY 261

There are 8 helices in PDB entry 8Q6R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	73	75	Right-handed 310
Helix 2	AA2	A	86	90	Right-handed 310
Helix 3	AA3	A	101	104	Right-handed 310
Helix 4	AA4	B	73	75	Right-handed 310
Helix 5	AA5	B	86	90	Right-handed 310
Helix 6	AA6	B	101	104	Right-handed 310
Helix 7	AA7	C	52	57	Right-handed alpha
Helix 8	AA8	E	52	57	Right-handed alpha

There are 18 sheets in PDB entry 8Q6R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	7	first strand
Strand 2	A	18	26	anti-parallel
Strand 3	A	77	82	anti-parallel
Strand 4	A	67	72	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	113	117	parallel
Strand 3	A	91	99	anti-parallel
Strand 4	A	31	39	anti-parallel
Strand 5	A	46	52	anti-parallel
Strand 6	A	57	59	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	113	117	parallel
Strand 3	A	91	99	anti-parallel
Strand 4	A	107	109	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	7	first strand
Strand 2	B	18	26	anti-parallel
Strand 3	B	77	82	anti-parallel
Strand 4	B	67	72	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	113	117	parallel
Strand 3	B	91	99	anti-parallel
Strand 4	B	31	39	anti-parallel
Strand 5	B	46	52	anti-parallel
Strand 6	B	57	59	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	113	117	parallel
Strand 3	B	91	99	anti-parallel
Strand 4	B	107	109	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	51	first strand
Strand 2	C	30	36	anti-parallel
Strand 3	C	63	65	anti-parallel
Strand 4	C	72	74	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	80	first strand
Strand 2	C	96	105	anti-parallel
Strand 3	C	120	127	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	264	265	first strand
Strand 2	D	275	281	anti-parallel
Strand 3	D	301	307	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	317	318	first strand
Strand 2	D	350	351	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	342	347	first strand
Strand 2	D	365	372	anti-parallel
Strand 3	D	427	432	parallel
Strand 4	D	417	418	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	436	438	first strand
Strand 2	D	377	382	parallel
Strand 3	D	400	409	anti-parallel
Strand 4	D	448	454	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	51	first strand
Strand 2	E	30	36	anti-parallel
Strand 3	E	63	65	anti-parallel
Strand 4	E	72	74	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	79	80	first strand
Strand 2	E	95	105	anti-parallel
Strand 3	E	120	128	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	264	265	first strand
Strand 2	F	275	281	anti-parallel
Strand 3	F	301	307	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	317	318	first strand
Strand 2	F	350	351	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	342	347	first strand
Strand 2	F	365	372	anti-parallel
Strand 3	F	427	432	parallel
Strand 4	F	417	418	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	436	438	first strand
Strand 2	F	377	382	parallel
Strand 3	F	400	409	anti-parallel
Strand 4	F	448	454	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Q6R

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q6R