Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q6V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Q6V entry

There are 2 chains in PDB entry 8Q6V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 387
B
 MET 1GLU 929
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 8Q6V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 55Right-handed 310
Helix 2
AA2
A
62 66Right-handed 310
Helix 3
AA3
A
70 73Right-handed 310
Helix 4
AA4
A
79 92Right-handed alpha
Helix 5
AA5
A
105 114Right-handed alpha
Helix 6
AA6
A
118 123Right-handed alpha
Helix 7
AA7
A
161 175Right-handed alpha
Helix 8
AA8
A
185 191Right-handed alpha
Helix 9
AA9
A
192 195Right-handed 310
Helix 10
AB1
A
235 237Right-handed 310
Helix 11
AB2
A
250 270Right-handed alpha
Helix 12
AB3
A
297 306Right-handed alpha
Helix 13
AB4
A
306 311Right-handed alpha
Helix 14
AB5
A
311 328Right-handed alpha
Helix 15
AB6
A
363 372Right-handed alpha
Helix 16
AB7
A
377 386Right-handed alpha
Helix 17
AB8
B
4 14Right-handed alpha
Helix 18
AB9
B
54 63Right-handed alpha
Helix 19
AC1
B
72 92Right-handed alpha
Helix 20
AC2
B
106 128Right-handed alpha
Helix 21
AC3
B
157 161Right-handed 310
Helix 22
AC4
B
164 185Right-handed alpha
Helix 23
AC5
B
186 189Right-handed 310
Helix 24
AC6
B
203 217Right-handed alpha
Helix 25
AC7
B
235 244Right-handed alpha
Helix 26
AC8
B
294 305Right-handed alpha
Helix 27
AC9
B
315 330Right-handed alpha
Helix 28
AD1
B
343 346Right-handed 310
Helix 29
AD2
B
347 359Right-handed alpha
Helix 30
AD3
B
360 362Right-handed 310
Helix 31
AD4
B
373 398Right-handed alpha
Helix 32
AD5
B
604 614Right-handed alpha
Helix 33
AD6
B
616 618Right-handed 310
Helix 34
AD7
B
619 645Right-handed alpha
Helix 35
AD8
B
660 664Right-handed 310
Helix 36
AD9
B
681 690Right-handed alpha
Helix 37
AE1
B
691 698Right-handed 310
Helix 38
AE2
B
699 708Right-handed alpha
Helix 39
AE3
B
713 717Right-handed 310
Helix 40
AE4
B
742 752Right-handed alpha
Helix 41
AE5
B
753 757Right-handed 310
Helix 42
AE6
B
758 763Right-handed alpha
Helix 43
AE7
B
780 789Right-handed alpha
Helix 44
AE8
B
838 842Right-handed 310
Helix 45
AE9
B
873 882Right-handed alpha
Helix 46
AF1
B
920 928Right-handed alpha
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There are 5 sheets in PDB entry 8Q6V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 8first strand
Strand 2
A
353 358anti-parallel
Strand 3
A
344 350anti-parallel
Strand 4
A
127 131anti-parallel
Strand 5
A
135 139anti-parallel
Strand 6
A
101 104parallel
Strand 7
A
214 221parallel
Strand 8
A
203 211anti-parallel
Strand 9
A
22 29anti-parallel
Strand 10
A
35 37anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 177first strand
Strand 2
A
44 46anti-parallel
Strand 3
A
224 225parallel
Strand 4
A
239 243anti-parallel
Strand 5
A
275 281parallel
Strand 6
A
287 294anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
198 199parallel
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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 20first strand
Strand 2
B
290 293anti-parallel
Strand 3
B
248 252anti-parallel
Strand 4
B
227 230parallel
Strand 5
B
47 52parallel
Strand 6
B
93 98parallel
Strand 7
B
192 195parallel
Strand 8
B
771 775anti-parallel
Strand 9
B
844 849anti-parallel
Strand 10
B
811 815anti-parallel
Strand 11
B
800 802anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
723 724first strand
Strand 2
B
735 736anti-parallel
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