Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q6Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Q6Y entry

There are 2 chains in PDB entry 8Q6Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 8GLY 396
B
 ILE 8SER 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 8Q6Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 27Right-handed 310
Helix 2
AA2
A
46 55Right-handed alpha
Helix 3
AA3
A
61 66Right-handed 310
Helix 4
AA4
A
78 82Right-handed 310
Helix 5
AA5
A
83 91Right-handed alpha
Helix 6
AA6
A
93 101Right-handed alpha
Helix 7
AA7
A
107 127Right-handed alpha
Helix 8
AA8
A
132 136Right-handed alpha
Helix 9
AA9
A
136 150Right-handed alpha
Helix 10
AB1
A
152 154Right-handed 310
Helix 11
AB2
A
155 162Right-handed alpha
Helix 12
AB3
A
162 167Right-handed alpha
Helix 13
AB4
A
174 192Right-handed alpha
Helix 14
AB5
A
197 207Right-handed alpha
Helix 15
AB6
A
216 249Right-handed alpha
Helix 16
AB7
A
249 259Right-handed alpha
Helix 17
AB8
A
262 274Right-handed alpha
Helix 18
AB9
A
305 311Right-handed alpha
Helix 19
AC1
A
328 332Right-handed 310
Helix 20
AC2
A
337 341Right-handed 310
Helix 21
AC3
A
344 363Right-handed alpha
Helix 22
AC4
A
371 375Right-handed 310
Helix 23
AC5
B
23 27Right-handed 310
Helix 24
AC6
B
46 56Right-handed alpha
Helix 25
AC7
B
61 66Right-handed 310
Helix 26
AC8
B
78 84Right-handed alpha
Helix 27
AC9
B
90 101Right-handed alpha
Helix 28
AD1
B
107 127Right-handed alpha
Helix 29
AD2
B
132 136Right-handed alpha
Helix 30
AD3
B
136 150Right-handed alpha
Helix 31
AD4
B
154 162Right-handed alpha
Helix 32
AD5
B
162 167Right-handed alpha
Helix 33
AD6
B
174 192Right-handed alpha
Helix 34
AD7
B
197 207Right-handed alpha
Helix 35
AD8
B
216 248Right-handed alpha
Helix 36
AD9
B
249 259Right-handed alpha
Helix 37
AE1
B
262 274Right-handed alpha
Helix 38
AE2
B
305 311Right-handed alpha
Helix 39
AE3
B
328 332Right-handed 310
Helix 40
AE4
B
337 341Right-handed 310
Helix 41
AE5
B
344 363Right-handed alpha
Helix 42
AE6
B
371 375Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 8Q6Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 34first strand
Strand 2
A
40 44anti-parallel
Strand 3
A
301 304parallel
Strand 4
A
281 285anti-parallel
Strand 5
A
59 60anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 131first strand
Strand 2
A
390 392anti-parallel
Strand 3
A
367 368anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 291first strand
Strand 2
A
294 296anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 10first strand
Strand 2
B
30 34parallel
Strand 3
B
40 44anti-parallel
Strand 4
B
301 304parallel
Strand 5
B
281 285anti-parallel
Strand 6
B
59 60anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 131first strand
Strand 2
B
390 392anti-parallel
Strand 3
B
367 368anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
289 291first strand
Strand 2
B
294 296anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il