Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q72

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Q72 entry

There are 16 chains in PDB entry 8Q72 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 1095
B	MET 1	ALA 1095
C	SER 40	THR 234
D	SER 40	THR 234
E	MET 1	GLU 498
F	MET 1	ALA 1095
G	MET 1	ALA 1095
H	SER 40	THR 234
I	SER 40	THR 234
J	MET 1	GLU 498
M	MET 1	GLN 117
N	MET 1	GLN 117
P	A 1	T 40
Q	A 1	T 40
R	A 1	T 40
S	A 1	T 40

There are196 helices in PDB entry 8Q72. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	6	Right-handed alpha
Helix 2	AA2	A	48	61	Right-handed alpha
Helix 3	AA3	A	79	86	Right-handed alpha
Helix 4	AA4	A	88	93	Right-handed 310
Helix 5	AA5	A	152	163	Right-handed alpha
Helix 6	AA6	A	164	175	Right-handed alpha
Helix 7	AA7	A	183	196	Right-handed alpha
Helix 8	AA8	A	200	205	Right-handed alpha
Helix 9	AA9	A	206	214	Right-handed 310
Helix 10	AB1	A	216	221	Right-handed alpha
Helix 11	AB2	A	231	343	Right-handed alpha
Helix 12	AB3	A	690	742	Right-handed alpha
Helix 13	AB4	A	746	757	Right-handed alpha
Helix 14	AB5	A	767	808	Right-handed alpha
Helix 15	AB6	A	821	835	Right-handed alpha
Helix 16	AB7	A	836	839	Right-handed 310
Helix 17	AB8	A	840	881	Right-handed alpha
Helix 18	AB9	A	901	917	Right-handed alpha
Helix 19	AC1	A	924	942	Right-handed alpha
Helix 20	AC2	A	948	953	Right-handed alpha
Helix 21	AC3	A	955	958	Right-handed 310
Helix 22	AC4	A	985	1006	Right-handed alpha
Helix 23	AC5	A	1028	1042	Right-handed alpha
Helix 24	AC6	A	1054	1060	Right-handed alpha
Helix 25	AC7	A	1082	1095	Right-handed alpha
Helix 26	AC8	B	1	8	Right-handed 310
Helix 27	AC9	B	50	61	Right-handed alpha
Helix 28	AD1	B	67	71	Right-handed 310
Helix 29	AD2	B	80	86	Right-handed alpha
Helix 30	AD3	B	152	163	Right-handed alpha
Helix 31	AD4	B	164	175	Right-handed alpha
Helix 32	AD5	B	183	196	Right-handed alpha
Helix 33	AD6	B	200	209	Right-handed alpha
Helix 34	AD7	B	216	224	Right-handed alpha
Helix 35	AD8	B	231	343	Right-handed alpha
Helix 36	AD9	B	690	742	Right-handed alpha
Helix 37	AE1	B	746	757	Right-handed alpha
Helix 38	AE2	B	764	766	Right-handed 310
Helix 39	AE3	B	767	808	Right-handed alpha
Helix 40	AE4	B	818	820	Right-handed 310
Helix 41	AE5	B	821	835	Right-handed alpha
Helix 42	AE6	B	835	855	Right-handed alpha
Helix 43	AE7	B	855	882	Right-handed alpha
Helix 44	AE8	B	901	918	Right-handed alpha
Helix 45	AE9	B	924	944	Right-handed alpha
Helix 46	AF1	B	947	955	Right-handed alpha
Helix 47	AF2	B	956	958	Right-handed 310
Helix 48	AF3	B	989	1005	Right-handed alpha
Helix 49	AF4	B	1028	1042	Right-handed alpha
Helix 50	AF5	B	1054	1059	Right-handed alpha
Helix 51	AF6	C	45	59	Right-handed alpha
Helix 52	AF7	C	66	76	Right-handed alpha
Helix 53	AF8	C	76	85	Right-handed alpha
Helix 54	AF9	C	95	97	Right-handed 310
Helix 55	AG1	C	113	117	Right-handed 310
Helix 56	AG2	C	126	148	Right-handed alpha
Helix 57	AG3	C	158	170	Right-handed alpha
Helix 58	AG4	C	174	192	Right-handed alpha
Helix 59	AG5	C	209	214	Right-handed alpha
Helix 60	AG6	C	215	234	Right-handed alpha
Helix 61	AG7	D	45	59	Right-handed alpha
Helix 62	AG8	D	66	75	Right-handed alpha
Helix 63	AG9	D	76	85	Right-handed alpha
Helix 64	AH1	D	126	147	Right-handed alpha
Helix 65	AH2	D	158	170	Right-handed alpha
Helix 66	AH3	D	174	192	Right-handed alpha
Helix 67	AH4	D	207	213	Right-handed 310
Helix 68	AH5	D	216	233	Right-handed alpha
Helix 69	AH6	E	2	16	Right-handed alpha
Helix 70	AH7	E	19	25	Right-handed alpha
Helix 71	AH8	E	29	42	Right-handed alpha
Helix 72	AH9	E	50	64	Right-handed alpha
Helix 73	AI1	E	76	91	Right-handed alpha
Helix 74	AI2	E	104	116	Right-handed alpha
Helix 75	AI3	E	127	143	Right-handed alpha
Helix 76	AI4	E	178	219	Right-handed alpha
Helix 77	AI5	E	223	238	Right-handed alpha
Helix 78	AI6	E	241	256	Right-handed alpha
Helix 79	AI7	E	258	272	Right-handed alpha
Helix 80	AI8	E	275	280	Right-handed alpha
Helix 81	AI9	E	281	290	Right-handed alpha
Helix 82	AJ1	E	290	313	Right-handed alpha
Helix 83	AJ2	E	313	318	Right-handed alpha
Helix 84	AJ3	E	322	340	Right-handed alpha
Helix 85	AJ4	E	346	351	Right-handed alpha
Helix 86	AJ5	E	368	372	Right-handed 310
Helix 87	AJ6	E	398	406	Right-handed alpha
Helix 88	AJ7	E	411	425	Right-handed alpha
Helix 89	AJ8	E	429	437	Right-handed alpha
Helix 90	AJ9	E	442	457	Right-handed alpha
Helix 91	AK1	E	488	495	Right-handed alpha
Helix 92	AK2	F	1	6	Right-handed 310
Helix 93	AK3	F	48	58	Right-handed alpha
Helix 94	AK4	F	79	86	Right-handed alpha
Helix 95	AK5	F	88	93	Right-handed 310
Helix 96	AK6	F	152	163	Right-handed alpha
Helix 97	AK7	F	164	175	Right-handed alpha
Helix 98	AK8	F	183	196	Right-handed alpha
Helix 99	AK9	F	200	205	Right-handed alpha
Helix 100	AL1	F	206	214	Right-handed 310
Helix 101	AL2	F	216	221	Right-handed alpha
Helix 102	AL3	F	231	343	Right-handed alpha
Helix 103	AL4	F	690	742	Right-handed alpha
Helix 104	AL5	F	746	757	Right-handed alpha
Helix 105	AL6	F	767	808	Right-handed alpha
Helix 106	AL7	F	821	835	Right-handed alpha
Helix 107	AL8	F	836	839	Right-handed 310
Helix 108	AL9	F	840	881	Right-handed alpha
Helix 109	AM1	F	901	917	Right-handed alpha
Helix 110	AM2	F	924	944	Right-handed alpha
Helix 111	AM3	F	947	953	Right-handed alpha
Helix 112	AM4	F	955	959	Right-handed 310
Helix 113	AM5	F	985	1005	Right-handed alpha
Helix 114	AM6	F	1028	1042	Right-handed alpha
Helix 115	AM7	F	1054	1060	Right-handed alpha
Helix 116	AM8	F	1082	1095	Right-handed alpha
Helix 117	AM9	G	1	8	Right-handed 310
Helix 118	AN1	G	48	61	Right-handed alpha
Helix 119	AN2	G	67	71	Right-handed 310
Helix 120	AN3	G	80	86	Right-handed alpha
Helix 121	AN4	G	152	163	Right-handed alpha
Helix 122	AN5	G	164	175	Right-handed alpha
Helix 123	AN6	G	183	196	Right-handed alpha
Helix 124	AN7	G	200	209	Right-handed alpha
Helix 125	AN8	G	216	224	Right-handed alpha
Helix 126	AN9	G	231	343	Right-handed alpha
Helix 127	AO1	G	690	742	Right-handed alpha
Helix 128	AO2	G	746	757	Right-handed alpha
Helix 129	AO3	G	764	766	Right-handed 310
Helix 130	AO4	G	767	808	Right-handed alpha
Helix 131	AO5	G	818	820	Right-handed 310
Helix 132	AO6	G	821	835	Right-handed alpha
Helix 133	AO7	G	835	854	Right-handed alpha
Helix 134	AO8	G	855	881	Right-handed alpha
Helix 135	AO9	G	882	884	Right-handed 310
Helix 136	AP1	G	901	918	Right-handed alpha
Helix 137	AP2	G	924	944	Right-handed alpha
Helix 138	AP3	G	947	955	Right-handed alpha
Helix 139	AP4	G	956	958	Right-handed 310
Helix 140	AP5	G	989	1005	Right-handed alpha
Helix 141	AP6	G	1028	1042	Right-handed alpha
Helix 142	AP7	G	1054	1059	Right-handed alpha
Helix 143	AP8	H	45	59	Right-handed alpha
Helix 144	AP9	H	66	76	Right-handed alpha
Helix 145	AQ1	H	76	85	Right-handed alpha
Helix 146	AQ2	H	113	117	Right-handed 310
Helix 147	AQ3	H	126	148	Right-handed alpha
Helix 148	AQ4	H	158	170	Right-handed alpha
Helix 149	AQ5	H	174	192	Right-handed alpha
Helix 150	AQ6	H	209	214	Right-handed alpha
Helix 151	AQ7	H	215	234	Right-handed alpha
Helix 152	AQ8	I	45	59	Right-handed alpha
Helix 153	AQ9	I	66	76	Right-handed alpha
Helix 154	AR1	I	76	85	Right-handed alpha
Helix 155	AR2	I	126	147	Right-handed alpha
Helix 156	AR3	I	158	170	Right-handed alpha
Helix 157	AR4	I	174	192	Right-handed alpha
Helix 158	AR5	I	207	213	Right-handed 310
Helix 159	AR6	I	216	233	Right-handed alpha
Helix 160	AR7	J	2	16	Right-handed alpha
Helix 161	AR8	J	19	27	Right-handed alpha
Helix 162	AR9	J	29	42	Right-handed alpha
Helix 163	AS1	J	50	64	Right-handed alpha
Helix 164	AS2	J	76	91	Right-handed alpha
Helix 165	AS3	J	104	116	Right-handed alpha
Helix 166	AS4	J	127	143	Right-handed alpha
Helix 167	AS5	J	178	219	Right-handed alpha
Helix 168	AS6	J	223	238	Right-handed alpha
Helix 169	AS7	J	241	256	Right-handed alpha
Helix 170	AS8	J	258	272	Right-handed alpha
Helix 171	AS9	J	275	280	Right-handed alpha
Helix 172	AT1	J	281	290	Right-handed alpha
Helix 173	AT2	J	290	313	Right-handed alpha
Helix 174	AT3	J	313	318	Right-handed alpha
Helix 175	AT4	J	322	340	Right-handed alpha
Helix 176	AT5	J	346	352	Right-handed alpha
Helix 177	AT6	J	368	370	Right-handed 310
Helix 178	AT7	J	398	406	Right-handed alpha
Helix 179	AT8	J	410	425	Right-handed alpha
Helix 180	AT9	J	430	437	Right-handed alpha
Helix 181	AU1	J	442	457	Right-handed alpha
Helix 182	AU2	J	488	495	Right-handed alpha
Helix 183	AU3	M	3	17	Right-handed alpha
Helix 184	AU4	M	17	27	Right-handed alpha
Helix 185	AU5	M	28	31	Right-handed 310
Helix 186	AU6	M	41	48	Right-handed alpha
Helix 187	AU7	M	48	61	Right-handed alpha
Helix 188	AU8	M	91	100	Right-handed alpha
Helix 189	AU9	M	101	117	Right-handed alpha
Helix 190	AV1	N	3	17	Right-handed alpha
Helix 191	AV2	N	17	27	Right-handed alpha
Helix 192	AV3	N	28	31	Right-handed 310
Helix 193	AV4	N	41	46	Right-handed alpha
Helix 194	AV5	N	48	61	Right-handed alpha
Helix 195	AV6	N	91	100	Right-handed alpha
Helix 196	AV7	N	101	115	Right-handed alpha

There are 29 sheets in PDB entry 8Q72. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	33	first strand
Strand 2	A	14	21	anti-parallel
Strand 3	A	107	115	anti-parallel
Strand 4	A	120	128	anti-parallel
Strand 5	A	140	146	anti-parallel
Strand 6	A	178	181	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1047	1049	first strand
Strand 2	A	39	42	parallel
Strand 3	A	1064	1071	parallel
Strand 4	A	1074	1081	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	890	898	first strand
Strand 2	A	960	968	anti-parallel
Strand 3	A	974	978	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	33	first strand
Strand 2	B	14	23	anti-parallel
Strand 3	B	107	116	anti-parallel
Strand 4	B	119	129	anti-parallel
Strand 5	B	139	146	anti-parallel
Strand 6	B	178	181	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1017	1020	first strand
Strand 2	B	1045	1050	parallel
Strand 3	B	39	42	parallel
Strand 4	B	1064	1071	parallel
Strand 5	B	1074	1081	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	890	898	first strand
Strand 2	B	960	968	anti-parallel
Strand 3	B	974	976	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	62	first strand
Strand 2	C	99	104	anti-parallel
Strand 3	C	89	94	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	157	first strand
Strand 2	C	203	205	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	62	first strand
Strand 2	D	99	104	anti-parallel
Strand 3	D	89	94	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	155	157	first strand
Strand 2	D	203	205	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	49	first strand
Strand 2	E	100	101	anti-parallel
Strand 3	E	96	97	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	461	471	first strand
Strand 2	E	477	484	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	30	first strand
Strand 2	F	14	21	anti-parallel
Strand 3	F	106	116	anti-parallel
Strand 4	F	119	129	anti-parallel
Strand 5	F	140	146	anti-parallel
Strand 6	F	178	181	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1048	1049	first strand
Strand 2	F	40	42	parallel
Strand 3	F	1064	1071	parallel
Strand 4	F	1074	1081	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	890	896	first strand
Strand 2	F	962	968	anti-parallel
Strand 3	F	974	978	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1017	1018	first strand
Strand 2	F	1045	1046	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	26	33	first strand
Strand 2	G	14	23	anti-parallel
Strand 3	G	106	116	anti-parallel
Strand 4	G	119	129	anti-parallel
Strand 5	G	139	146	anti-parallel
Strand 6	G	178	181	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1017	1020	first strand
Strand 2	G	1045	1050	parallel
Strand 3	G	39	42	parallel
Strand 4	G	1064	1071	parallel
Strand 5	G	1074	1081	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	890	898	first strand
Strand 2	G	960	968	anti-parallel
Strand 3	G	974	976	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	60	62	first strand
Strand 2	H	99	104	anti-parallel
Strand 3	H	89	94	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	155	157	first strand
Strand 2	H	203	205	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	60	62	first strand
Strand 2	I	99	104	anti-parallel
Strand 3	I	89	94	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	123	124	first strand
Strand 2	J	372	373	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	155	157	first strand
Strand 2	I	203	205	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	48	49	first strand
Strand 2	J	100	101	anti-parallel
Strand 3	J	96	97	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	428	429	first strand
Strand 2	J	486	487	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	461	471	first strand
Strand 2	J	477	484	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	33	36	first strand
Strand 2	M	81	89	anti-parallel
Strand 3	M	66	72	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	33	36	first strand
Strand 2	N	81	89	anti-parallel
Strand 3	N	66	72	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Q72

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q72