Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q76


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Q76 entry

There are 2 chains in PDB entry 8Q76 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 184PHE 640
A
 LYS 642LEU 957
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 8Q76. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
197 210Right-handed alpha
Helix 2
AA2
A
236 246Right-handed alpha
Helix 3
AA3
A
263 296Right-handed alpha
Helix 4
AA4
A
305 309Right-handed 310
Helix 5
AA5
A
316 332Right-handed alpha
Helix 6
AA6
A
334 344Right-handed alpha
Helix 7
AA7
A
354 377Right-handed alpha
Helix 8
AA8
A
385 407Right-handed alpha
Helix 9
AA9
A
414 421Right-handed alpha
Helix 10
AB1
A
445 447Right-handed 310
Helix 11
AB2
A
512 515Right-handed 310
Helix 12
AB3
A
516 530Right-handed alpha
Helix 13
AB4
A
537 545Right-handed alpha
Helix 14
AB5
A
546 567Right-handed alpha
Helix 15
AB6
A
571 575Right-handed 310
Helix 16
AB7
A
580 596Right-handed alpha
Helix 17
AB8
A
605 620Right-handed alpha
Helix 18
AB9
A
625 632Right-handed alpha
Helix 19
AC1
A
663 676Right-handed alpha
Helix 20
AC2
A
680 697Right-handed alpha
Helix 21
AC3
A
731 738Right-handed alpha
Helix 22
AC4
A
744 748Right-handed 310
Helix 23
AC5
A
782 793Right-handed alpha
Helix 24
AC6
A
804 816Right-handed alpha
Helix 25
AC7
A
825 839Right-handed alpha
Helix 26
AC8
A
849 851Right-handed 310
Helix 27
AC9
A
852 859Right-handed alpha
Helix 28
AD1
A
869 876Right-handed alpha
Helix 29
AD2
A
885 900Right-handed alpha
Helix 30
AD3
A
902 922Right-handed alpha
Helix 31
AD4
A
934 939Right-handed alpha
Helix 32
AD5
A
940 948Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 8Q76. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 220first strand
Strand 2
A
225 229anti-parallel
Strand 3
A
187 193anti-parallel
Strand 4
A
255 256anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 426first strand
Strand 2
A
441 443anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 453first strand
Strand 2
A
506 509anti-parallel
Strand 3
A
465 469anti-parallel
Strand 4
A
493 494anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
472 474first strand
Strand 2
A
486 488anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
621 623first strand
Strand 2
A
878 880anti-parallel
Strand 3
A
861 865parallel
Strand 4
A
843 847parallel
Strand 5
A
637 640parallel
Strand 6
A
796 800parallel
Strand 7
A
819 821parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
652 654first strand
Strand 2
A
774 776anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
707 708first strand
Strand 2
A
717 722anti-parallel
Strand 3
A
725 730anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il