Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q7D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Q7D entry

There are 4 chains in PDB entry 8Q7D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
d	LEU 17	LEU 302
p	SER 49	LEU 506
Y	T 1	C 120
Z	G 1	A 120

There are 25 helices in PDB entry 8Q7D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	d	35	40	Right-handed alpha
Helix 2	AA2	d	41	46	Right-handed 310
Helix 3	AA3	d	48	56	Right-handed alpha
Helix 4	AA4	d	71	90	Right-handed alpha
Helix 5	AA5	d	107	112	Right-handed alpha
Helix 6	AA6	d	142	144	Right-handed 310
Helix 7	AA7	d	220	240	Right-handed alpha
Helix 8	AA8	d	273	295	Right-handed alpha
Helix 9	AA9	p	83	89	Right-handed alpha
Helix 10	AB1	p	90	92	Right-handed 310
Helix 11	AB2	p	94	110	Right-handed alpha
Helix 12	AB3	p	136	153	Right-handed alpha
Helix 13	AB4	p	163	179	Right-handed alpha
Helix 14	AB5	p	202	204	Right-handed 310
Helix 15	AB6	p	250	254	Right-handed 310
Helix 16	AB7	p	259	264	Right-handed alpha
Helix 17	AB8	p	264	284	Right-handed alpha
Helix 18	AB9	p	301	317	Right-handed alpha
Helix 19	AC1	p	347	363	Right-handed alpha
Helix 20	AC2	p	365	370	Right-handed 310
Helix 21	AC3	p	397	418	Right-handed alpha
Helix 22	AC4	p	419	423	Right-handed 310
Helix 23	AC5	p	437	452	Right-handed alpha
Helix 24	AC6	p	454	462	Right-handed alpha
Helix 25	AC7	p	475	506	Right-handed alpha

There are 7 sheets in PDB entry 8Q7D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	97	106	first strand
Strand 2	d	192	203	anti-parallel
Strand 3	d	123	133	anti-parallel
Strand 4	d	136	140	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	116	117	first strand
Strand 2	d	154	157	anti-parallel
Strand 3	d	146	149	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	250	255	first strand
Strand 2	d	258	263	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	123	128	first strand
Strand 2	p	426	431	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	182	187	first strand
Strand 2	p	195	201	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	206	208	first strand
Strand 2	p	223	227	anti-parallel
Strand 3	p	230	235	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	290	295	first strand
Strand 2	p	332	337	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Q7D

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q7D