Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q7S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Q7S entry

There are 15 chains in PDB entry 8Q7S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 334	PRO 521
B	SER 0	SER 115
C	VAL 2	SER 127
D	ASN 334	LEU 518
E	SER 0	VAL 113
F	GLN 1	SER 128
G	ASN 334	LEU 517
H	GLN 1	SER 114
I	GLN 1	SER 128
J	ASN 334	GLU 516
K	VAL 2	SER 114
L	GLN 1	SER 128
M	LEU 335	LEU 517
N	SER 0	SER 114
O	GLN 1	SER 128

There are 55 helices in PDB entry 8Q7S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	338	343	Right-handed alpha
Helix 2	AA2	A	365	370	Right-handed alpha
Helix 3	AA3	A	383	387	Right-handed 310
Helix 4	AA4	A	405	410	Right-handed 310
Helix 5	AA5	A	416	422	Right-handed alpha
Helix 6	AA6	A	438	443	Right-handed alpha
Helix 7	AA7	A	502	505	Right-handed 310
Helix 8	AA8	B	28	32	Right-handed 310
Helix 9	AA9	B	87	91	Right-handed 310
Helix 10	AB1	C	61	65	Right-handed 310
Helix 11	AB2	C	87	91	Right-handed 310
Helix 12	AB3	D	338	343	Right-handed alpha
Helix 13	AB4	D	365	370	Right-handed alpha
Helix 14	AB5	D	383	390	Right-handed 310
Helix 15	AB6	D	405	410	Right-handed 310
Helix 16	AB7	D	416	422	Right-handed alpha
Helix 17	AB8	D	438	443	Right-handed alpha
Helix 18	AB9	D	502	505	Right-handed 310
Helix 19	AC1	E	28	32	Right-handed 310
Helix 20	AC2	E	62	65	Right-handed 310
Helix 21	AC3	E	87	91	Right-handed 310
Helix 22	AC4	F	87	91	Right-handed 310
Helix 23	AC5	G	338	343	Right-handed alpha
Helix 24	AC6	G	349	353	Right-handed 310
Helix 25	AC7	G	365	370	Right-handed alpha
Helix 26	AC8	G	383	387	Right-handed 310
Helix 27	AC9	G	405	410	Right-handed 310
Helix 28	AD1	G	416	422	Right-handed alpha
Helix 29	AD2	G	438	443	Right-handed alpha
Helix 30	AD3	G	502	505	Right-handed 310
Helix 31	AD4	H	28	32	Right-handed 310
Helix 32	AD5	H	87	91	Right-handed 310
Helix 33	AD6	I	87	91	Right-handed 310
Helix 34	AD7	J	338	343	Right-handed alpha
Helix 35	AD8	J	365	370	Right-handed alpha
Helix 36	AD9	J	383	387	Right-handed 310
Helix 37	AE1	J	405	410	Right-handed 310
Helix 38	AE2	J	416	422	Right-handed alpha
Helix 39	AE3	J	438	443	Right-handed alpha
Helix 40	AE4	J	502	505	Right-handed 310
Helix 41	AE5	K	28	32	Right-handed 310
Helix 42	AE6	K	62	65	Right-handed 310
Helix 43	AE7	K	87	91	Right-handed 310
Helix 44	AE8	L	87	91	Right-handed 310
Helix 45	AE9	M	337	343	Right-handed alpha
Helix 46	AF1	M	365	370	Right-handed alpha
Helix 47	AF2	M	383	387	Right-handed 310
Helix 48	AF3	M	405	410	Right-handed 310
Helix 49	AF4	M	416	422	Right-handed alpha
Helix 50	AF5	M	438	443	Right-handed alpha
Helix 51	AF6	M	502	505	Right-handed 310
Helix 52	AF7	N	28	32	Right-handed 310
Helix 53	AF8	N	87	91	Right-handed 310
Helix 54	AF9	O	61	65	Right-handed 310
Helix 55	AG1	O	87	91	Right-handed 310

There are 40 sheets in PDB entry 8Q7S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	394	403	anti-parallel
Strand 3	A	507	516	anti-parallel
Strand 4	A	431	437	anti-parallel
Strand 5	A	376	380	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	454	first strand
Strand 2	A	492	494	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	474	first strand
Strand 2	A	488	489	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	45	51	anti-parallel
Strand 3	B	34	39	anti-parallel
Strand 4	B	92	97	anti-parallel
Strand 5	B	109	111	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	71	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	122	126	parallel
Strand 3	C	92	100	anti-parallel
Strand 4	C	32	39	anti-parallel
Strand 5	C	46	52	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	122	126	parallel
Strand 3	C	92	100	anti-parallel
Strand 4	C	117	118	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	358	first strand
Strand 2	D	394	403	anti-parallel
Strand 3	D	507	516	anti-parallel
Strand 4	D	431	437	anti-parallel
Strand 5	D	376	380	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	452	454	first strand
Strand 2	D	492	494	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	473	474	first strand
Strand 2	D	488	489	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	17	25	anti-parallel
Strand 3	E	78	84	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	60	first strand
Strand 2	E	45	51	anti-parallel
Strand 3	E	34	39	anti-parallel
Strand 4	E	92	96	anti-parallel
Strand 5	E	109	111	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	122	126	parallel
Strand 3	F	92	100	anti-parallel
Strand 4	F	32	39	anti-parallel
Strand 5	F	46	52	anti-parallel
Strand 6	F	58	60	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	122	126	parallel
Strand 3	F	92	100	anti-parallel
Strand 4	F	117	118	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	354	358	first strand
Strand 2	G	395	403	anti-parallel
Strand 3	G	507	515	anti-parallel
Strand 4	G	431	437	anti-parallel
Strand 5	G	376	380	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	452	454	first strand
Strand 2	G	492	494	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	473	474	first strand
Strand 2	G	488	489	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	109	113	parallel
Strand 3	H	92	96	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	78	83	anti-parallel
Strand 4	I	68	73	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	12	first strand
Strand 2	I	122	126	parallel
Strand 3	I	92	100	anti-parallel
Strand 4	I	32	39	anti-parallel
Strand 5	I	46	52	anti-parallel
Strand 6	I	58	60	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	12	first strand
Strand 2	I	122	126	parallel
Strand 3	I	92	100	anti-parallel
Strand 4	I	117	118	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	354	357	first strand
Strand 2	J	395	403	anti-parallel
Strand 3	J	507	515	anti-parallel
Strand 4	J	431	437	anti-parallel
Strand 5	J	376	379	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	452	454	first strand
Strand 2	J	492	494	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	473	474	first strand
Strand 2	J	488	489	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	7	first strand
Strand 2	K	17	25	anti-parallel
Strand 3	K	78	84	anti-parallel
Strand 4	K	68	72	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	11	12	first strand
Strand 2	K	109	113	parallel
Strand 3	K	92	96	anti-parallel
Strand 4	K	34	39	anti-parallel
Strand 5	K	46	51	anti-parallel
Strand 6	K	58	60	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	3	7	first strand
Strand 2	L	18	25	anti-parallel
Strand 3	L	78	83	anti-parallel
Strand 4	L	68	73	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	12	first strand
Strand 2	L	122	126	parallel
Strand 3	L	92	100	anti-parallel
Strand 4	L	32	39	anti-parallel
Strand 5	L	46	52	anti-parallel
Strand 6	L	58	60	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	12	first strand
Strand 2	L	122	126	parallel
Strand 3	L	92	100	anti-parallel
Strand 4	L	117	118	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	354	358	first strand
Strand 2	M	394	403	anti-parallel
Strand 3	M	507	516	anti-parallel
Strand 4	M	431	437	anti-parallel
Strand 5	M	376	379	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	452	454	first strand
Strand 2	M	492	494	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	473	474	first strand
Strand 2	M	488	489	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	8	first strand
Strand 2	N	17	25	anti-parallel
Strand 3	N	78	84	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	11	12	first strand
Strand 2	N	109	113	parallel
Strand 3	N	92	97	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	45	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	5	7	first strand
Strand 2	O	18	23	anti-parallel
Strand 3	O	78	83	anti-parallel
Strand 4	O	68	72	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	11	12	first strand
Strand 2	O	122	126	parallel
Strand 3	O	92	100	anti-parallel
Strand 4	O	32	39	anti-parallel
Strand 5	O	46	52	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	11	12	first strand
Strand 2	O	122	126	parallel
Strand 3	O	92	100	anti-parallel
Strand 4	O	117	118	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Q7S

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q7S