Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q7W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Q7W entry

There are 15 chains in PDB entry 8Q7W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
5	A 3	A 117
A	MET 25	SER 1755
B	PRO 36	MET 63
C	GLN 107	PHE 952
D	CYS 52	GLN 357
E	ASP 242	PRO 805
F	GLU 99	GLU 121
G	ASP 64	GLY 231
a	LYS 2	ASP 82
b	SER 6	LYS 88
c	GLU 10	ALA 116
d	ILE 3	LYS 84
e	MET 14	VAL 90
f	LEU 3	VAL 75
g	LYS 3	VAL 76

There are145 helices in PDB entry 8Q7W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	45	Right-handed alpha
Helix 2	AA2	A	62	73	Right-handed alpha
Helix 3	AA3	A	86	91	Right-handed alpha
Helix 4	AA4	A	94	104	Right-handed alpha
Helix 5	AA5	A	136	158	Right-handed alpha
Helix 6	AA6	A	177	182	Right-handed alpha
Helix 7	AA7	A	231	242	Right-handed alpha
Helix 8	AA8	A	259	270	Right-handed alpha
Helix 9	AA9	A	309	316	Right-handed alpha
Helix 10	AB1	A	397	404	Right-handed alpha
Helix 11	AB2	A	405	407	Right-handed 310
Helix 12	AB3	A	422	424	Right-handed 310
Helix 13	AB4	A	427	434	Right-handed alpha
Helix 14	AB5	A	440	460	Right-handed alpha
Helix 15	AB6	A	471	478	Right-handed alpha
Helix 16	AB7	A	489	509	Right-handed alpha
Helix 17	AB8	A	531	537	Right-handed alpha
Helix 18	AB9	A	541	565	Right-handed alpha
Helix 19	AC1	A	570	584	Right-handed alpha
Helix 20	AC2	A	584	589	Right-handed alpha
Helix 21	AC3	A	598	617	Right-handed alpha
Helix 22	AC4	A	630	657	Right-handed alpha
Helix 23	AC5	A	680	695	Right-handed alpha
Helix 24	AC6	A	698	706	Right-handed alpha
Helix 25	AC7	A	708	722	Right-handed alpha
Helix 26	AC8	A	732	763	Right-handed alpha
Helix 27	AC9	A	768	798	Right-handed alpha
Helix 28	AD1	A	802	821	Right-handed alpha
Helix 29	AD2	A	834	850	Right-handed alpha
Helix 30	AD3	A	857	873	Right-handed alpha
Helix 31	AD4	A	873	887	Right-handed alpha
Helix 32	AD5	A	912	933	Right-handed alpha
Helix 33	AD6	A	947	961	Right-handed alpha
Helix 34	AD7	A	989	998	Right-handed alpha
Helix 35	AD8	A	1002	1012	Right-handed alpha
Helix 36	AD9	A	1036	1053	Right-handed alpha
Helix 37	AE1	A	1054	1063	Right-handed alpha
Helix 38	AE2	A	1077	1082	Right-handed alpha
Helix 39	AE3	A	1102	1117	Right-handed alpha
Helix 40	AE4	A	1143	1159	Right-handed alpha
Helix 41	AE5	A	1169	1173	Right-handed 310
Helix 42	AE6	A	1233	1248	Right-handed alpha
Helix 43	AE7	A	1255	1272	Right-handed alpha
Helix 44	AE8	A	1276	1281	Right-handed alpha
Helix 45	AE9	A	1282	1304	Right-handed alpha
Helix 46	AF1	A	1312	1316	Right-handed 310
Helix 47	AF2	A	1319	1323	Right-handed 310
Helix 48	AF3	A	1368	1372	Right-handed 310
Helix 49	AF4	A	1374	1399	Right-handed alpha
Helix 50	AF5	A	1418	1424	Right-handed 310
Helix 51	AF6	A	1426	1431	Right-handed alpha
Helix 52	AF7	A	1435	1442	Right-handed alpha
Helix 53	AF8	A	1443	1446	Right-handed 310
Helix 54	AF9	A	1457	1462	Right-handed alpha
Helix 55	AG1	A	1467	1478	Right-handed alpha
Helix 56	AG2	A	1480	1485	Right-handed alpha
Helix 57	AG3	A	1530	1538	Right-handed alpha
Helix 58	AG4	A	1538	1543	Right-handed alpha
Helix 59	AG5	A	1566	1577	Right-handed alpha
Helix 60	AG6	A	1580	1599	Right-handed alpha
Helix 61	AG7	A	1675	1688	Right-handed alpha
Helix 62	AG8	A	1722	1737	Right-handed alpha
Helix 63	AG9	A	1737	1752	Right-handed alpha
Helix 64	AH1	C	115	123	Right-handed alpha
Helix 65	AH2	C	142	154	Right-handed alpha
Helix 66	AH3	C	171	178	Right-handed alpha
Helix 67	AH4	C	212	220	Right-handed alpha
Helix 68	AH5	C	236	249	Right-handed alpha
Helix 69	AH6	C	261	266	Right-handed alpha
Helix 70	AH7	C	270	293	Right-handed alpha
Helix 71	AH8	C	301	305	Right-handed 310
Helix 72	AH9	C	319	331	Right-handed alpha
Helix 73	AI1	C	335	340	Right-handed alpha
Helix 74	AI2	C	341	343	Right-handed 310
Helix 75	AI3	C	367	373	Right-handed alpha
Helix 76	AI4	C	373	386	Right-handed alpha
Helix 77	AI5	C	391	400	Right-handed alpha
Helix 78	AI6	C	411	425	Right-handed alpha
Helix 79	AI7	C	427	437	Right-handed alpha
Helix 80	AI8	C	444	453	Right-handed alpha
Helix 81	AI9	C	459	466	Right-handed alpha
Helix 82	AJ1	C	596	598	Right-handed 310
Helix 83	AJ2	C	599	607	Right-handed alpha
Helix 84	AJ3	C	609	614	Right-handed alpha
Helix 85	AJ4	C	633	649	Right-handed alpha
Helix 86	AJ5	C	695	702	Right-handed alpha
Helix 87	AJ6	C	711	721	Right-handed alpha
Helix 88	AJ7	C	725	731	Right-handed alpha
Helix 89	AJ8	C	755	774	Right-handed alpha
Helix 90	AJ9	C	799	803	Right-handed 310
Helix 91	AK1	C	804	823	Right-handed alpha
Helix 92	AK2	C	841	850	Right-handed alpha
Helix 93	AK3	C	851	853	Right-handed 310
Helix 94	AK4	C	882	891	Right-handed alpha
Helix 95	AK5	C	925	927	Right-handed 310
Helix 96	AK6	C	928	942	Right-handed alpha
Helix 97	AK7	E	243	255	Right-handed alpha
Helix 98	AK8	E	277	281	Right-handed 310
Helix 99	AK9	E	287	292	Right-handed alpha
Helix 100	AL1	E	308	315	Right-handed alpha
Helix 101	AL2	E	319	328	Right-handed alpha
Helix 102	AL3	E	331	352	Right-handed alpha
Helix 103	AL4	E	356	360	Right-handed 310
Helix 104	AL5	E	366	377	Right-handed alpha
Helix 105	AL6	E	399	410	Right-handed alpha
Helix 106	AL7	E	415	427	Right-handed alpha
Helix 107	AL8	E	440	455	Right-handed alpha
Helix 108	AL9	E	457	462	Right-handed alpha
Helix 109	AM1	E	477	493	Right-handed alpha
Helix 110	AM2	E	507	517	Right-handed alpha
Helix 111	AM3	E	525	534	Right-handed alpha
Helix 112	AM4	E	550	558	Right-handed alpha
Helix 113	AM5	E	559	569	Right-handed alpha
Helix 114	AM6	E	570	575	Right-handed 310
Helix 115	AM7	E	579	583	Right-handed 310
Helix 116	AM8	E	584	593	Right-handed alpha
Helix 117	AM9	E	594	598	Right-handed 310
Helix 118	AN1	E	610	621	Right-handed alpha
Helix 119	AN2	E	647	649	Right-handed 310
Helix 120	AN3	E	650	661	Right-handed alpha
Helix 121	AN4	E	673	687	Right-handed alpha
Helix 122	AN5	E	704	713	Right-handed alpha
Helix 123	AN6	E	744	753	Right-handed alpha
Helix 124	AN7	E	754	756	Right-handed 310
Helix 125	AN8	E	769	774	Right-handed 310
Helix 126	AN9	E	775	785	Right-handed alpha
Helix 127	AO1	E	793	797	Right-handed alpha
Helix 128	AO2	E	798	802	Right-handed 310
Helix 129	AO3	F	100	114	Right-handed alpha
Helix 130	AO4	F	116	121	Right-handed alpha
Helix 131	AO5	G	92	98	Right-handed alpha
Helix 132	AO6	G	153	165	Right-handed alpha
Helix 133	AO7	G	170	179	Right-handed alpha
Helix 134	AO8	G	195	211	Right-handed alpha
Helix 135	AO9	G	221	231	Right-handed alpha
Helix 136	AP1	a	3	8	Right-handed alpha
Helix 137	AP2	a	75	79	Right-handed 310
Helix 138	AP3	b	7	11	Right-handed alpha
Helix 139	AP4	c	18	23	Right-handed alpha
Helix 140	AP5	c	29	38	Right-handed alpha
Helix 141	AP6	d	4	13	Right-handed alpha
Helix 142	AP7	d	74	84	Right-handed 310
Helix 143	AP8	e	16	28	Right-handed alpha
Helix 144	AP9	f	6	14	Right-handed alpha
Helix 145	AQ1	g	9	13	Right-handed 310

There are 32 sheets in PDB entry 8Q7W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	121	first strand
Strand 2	A	482	488	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	135	first strand
Strand 2	A	419	420	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	229	first strand
Strand 2	A	415	417	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	516	518	first strand
Strand 2	A	524	526	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	906	910	first strand
Strand 2	A	894	899	anti-parallel
Strand 3	A	1016	1019	parallel
Strand 4	A	1022	1025	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1085	1090	first strand
Strand 2	A	1094	1101	anti-parallel
Strand 3	A	973	980	anti-parallel
Strand 4	A	1174	1178	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1185	1189	first strand
Strand 2	A	1192	1198	anti-parallel
Strand 3	A	1224	1232	anti-parallel
Strand 4	A	1213	1217	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1341	1346	first strand
Strand 2	A	1349	1354	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1502	1503	first strand
Strand 2	A	1753	1754	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1561	1563	first strand
Strand 2	A	1552	1555	anti-parallel
Strand 3	G	85	88	parallel
Strand 4	G	81	82	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1606	1611	first strand
Strand 2	A	1629	1637	anti-parallel
Strand 3	A	1657	1667	anti-parallel
Strand 4	A	1700	1706	parallel
Strand 5	A	1711	1716	anti-parallel
Strand 6	A	1643	1644	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	191	first strand
Strand 2	C	197	204	anti-parallel
Strand 3	C	129	136	parallel
Strand 4	C	224	230	parallel
Strand 5	C	252	258	parallel
Strand 6	C	307	311	parallel
Strand 7	C	316	318	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	350	first strand
Strand 2	C	355	357	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	522	526	first strand
Strand 2	C	506	510	anti-parallel
Strand 3	C	563	566	anti-parallel
Strand 4	C	475	483	anti-parallel
Strand 5	C	490	498	anti-parallel
Strand 6	C	549	553	anti-parallel
Strand 7	C	530	533	anti-parallel
Strand 8	C	538	541	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	501	502	first strand
Strand 2	C	543	544	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	618	621	first strand
Strand 2	C	627	631	anti-parallel
Strand 3	C	588	594	anti-parallel
Strand 4	C	653	655	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	618	621	first strand
Strand 2	C	627	631	anti-parallel
Strand 3	C	588	594	anti-parallel
Strand 4	C	659	660	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	663	666	first strand
Strand 2	C	825	838	anti-parallel
Strand 3	C	869	876	anti-parallel
Strand 4	C	856	862	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	663	666	first strand
Strand 2	C	825	838	anti-parallel
Strand 3	C	896	906	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	674	677	first strand
Strand 2	C	684	691	anti-parallel
Strand 3	C	787	795	anti-parallel
Strand 4	C	743	747	parallel
Strand 5	C	732	734	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	63	first strand
Strand 2	D	350	352	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	74	first strand
Strand 2	D	80	85	anti-parallel
Strand 3	D	89	94	anti-parallel
Strand 4	D	101	106	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	117	first strand
Strand 2	D	123	128	anti-parallel
Strand 3	D	133	137	anti-parallel
Strand 4	D	143	147	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	159	first strand
Strand 2	D	167	171	anti-parallel
Strand 3	D	175	177	anti-parallel
Strand 4	D	189	191	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	196	201	first strand
Strand 2	D	207	212	anti-parallel
Strand 3	D	216	221	anti-parallel
Strand 4	D	227	232	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	243	first strand
Strand 2	D	249	254	anti-parallel
Strand 3	D	258	263	anti-parallel
Strand 4	D	275	277	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	291	293	first strand
Strand 2	D	299	302	anti-parallel
Strand 3	D	309	313	anti-parallel
Strand 4	D	319	323	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	330	335	first strand
Strand 2	D	341	346	anti-parallel
Strand 3	D	354	355	anti-parallel

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There are 8 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	379	381	first strand
Strand 2	E	625	629	anti-parallel
Strand 3	E	431	434	parallel
Strand 4	E	601	606	parallel
Strand 5	E	545	549	parallel
Strand 6	E	471	474	parallel
Strand 7	E	521	524	parallel
Strand 8	E	499	502	parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	640	645	first strand
Strand 2	E	763	768	parallel
Strand 3	E	735	738	parallel
Strand 4	E	667	670	parallel
Strand 5	E	717	720	parallel
Strand 6	E	691	693	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	99	101	first strand
Strand 2	G	107	109	anti-parallel

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There are 37 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	54	55	first strand
Strand 2	f	42	51	anti-parallel
Strand 3	f	60	64	anti-parallel
Strand 4	c	108	111	anti-parallel
Strand 5	c	42	46	anti-parallel
Strand 6	c	50	58	anti-parallel
Strand 7	c	65	76	anti-parallel
Strand 8	c	90	101	anti-parallel
Strand 9	a	65	69	anti-parallel
Strand 10	a	14	19	anti-parallel
Strand 11	a	24	32	anti-parallel
Strand 12	a	38	46	anti-parallel
Strand 13	a	52	60	anti-parallel
Strand 14	b	77	84	anti-parallel
Strand 15	b	16	21	anti-parallel
Strand 16	b	26	33	anti-parallel
Strand 17	b	40	48	anti-parallel
Strand 18	b	64	72	anti-parallel
Strand 19	d	68	73	anti-parallel
Strand 20	d	17	22	anti-parallel
Strand 21	d	27	35	anti-parallel
Strand 22	d	41	49	anti-parallel
Strand 23	d	55	63	anti-parallel
Strand 24	g	67	72	anti-parallel
Strand 25	g	16	21	anti-parallel
Strand 26	g	25	33	anti-parallel
Strand 27	g	40	46	anti-parallel
Strand 28	g	56	62	anti-parallel
Strand 29	e	84	88	anti-parallel
Strand 30	e	30	35	anti-parallel
Strand 31	e	42	46	anti-parallel
Strand 32	e	56	64	anti-parallel
Strand 33	e	72	79	anti-parallel
Strand 34	f	69	73	anti-parallel
Strand 35	f	18	23	anti-parallel
Strand 36	f	27	36	anti-parallel
Strand 37	f	42	51	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Q7W

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q7W