Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q7Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Q7Y entry

There are 4 chains in PDB entry 8Q7Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 15	GLN 624
B	ASP 15	GLN 624
C	ASP 15	GLN 624
D	ASP 15	GLN 624

There are 48 helices in PDB entry 8Q7Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	90	94	Right-handed alpha
Helix 2	AA2	A	192	196	Right-handed 310
Helix 3	AA3	A	337	341	Right-handed 310
Helix 4	AA4	A	368	382	Right-handed alpha
Helix 5	AA5	A	395	406	Right-handed alpha
Helix 6	AA6	A	422	426	Right-handed 310
Helix 7	AA7	A	429	431	Right-handed 310
Helix 8	AA8	A	432	448	Right-handed alpha
Helix 9	AA9	A	467	479	Right-handed alpha
Helix 10	AB1	A	520	525	Right-handed alpha
Helix 11	AB2	A	548	559	Right-handed alpha
Helix 12	AB3	A	618	624	Right-handed alpha
Helix 13	AB4	B	90	94	Right-handed alpha
Helix 14	AB5	B	192	196	Right-handed 310
Helix 15	AB6	B	337	341	Right-handed 310
Helix 16	AB7	B	368	382	Right-handed alpha
Helix 17	AB8	B	395	406	Right-handed alpha
Helix 18	AB9	B	422	426	Right-handed 310
Helix 19	AC1	B	429	431	Right-handed 310
Helix 20	AC2	B	432	448	Right-handed alpha
Helix 21	AC3	B	467	479	Right-handed alpha
Helix 22	AC4	B	520	525	Right-handed alpha
Helix 23	AC5	B	548	559	Right-handed alpha
Helix 24	AC6	B	618	624	Right-handed alpha
Helix 25	AC7	C	90	94	Right-handed alpha
Helix 26	AC8	C	192	196	Right-handed 310
Helix 27	AC9	C	337	341	Right-handed 310
Helix 28	AD1	C	368	382	Right-handed alpha
Helix 29	AD2	C	395	406	Right-handed alpha
Helix 30	AD3	C	422	426	Right-handed 310
Helix 31	AD4	C	429	431	Right-handed 310
Helix 32	AD5	C	432	448	Right-handed alpha
Helix 33	AD6	C	467	479	Right-handed alpha
Helix 34	AD7	C	520	525	Right-handed alpha
Helix 35	AD8	C	548	559	Right-handed alpha
Helix 36	AD9	C	618	624	Right-handed alpha
Helix 37	AE1	D	90	94	Right-handed alpha
Helix 38	AE2	D	192	196	Right-handed 310
Helix 39	AE3	D	337	341	Right-handed 310
Helix 40	AE4	D	368	382	Right-handed alpha
Helix 41	AE5	D	395	406	Right-handed alpha
Helix 42	AE6	D	422	426	Right-handed 310
Helix 43	AE7	D	429	431	Right-handed 310
Helix 44	AE8	D	432	448	Right-handed alpha
Helix 45	AE9	D	467	479	Right-handed alpha
Helix 46	AF1	D	520	525	Right-handed alpha
Helix 47	AF2	D	548	559	Right-handed alpha
Helix 48	AF3	D	618	624	Right-handed alpha

There are 20 sheets in PDB entry 8Q7Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	24	first strand
Strand 2	A	161	162	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	89	first strand
Strand 2	A	207	208	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	199	first strand
Strand 2	A	416	417	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	336	first strand
Strand 2	A	343	344	anti-parallel
Strand 3	A	347	348	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	356	first strand
Strand 2	A	386	389	parallel
Strand 3	A	408	412	parallel
Strand 4	A	453	457	parallel
Strand 5	A	484	486	parallel
Strand 6	A	498	499	parallel
Strand 7	A	533	538	parallel
Strand 8	A	562	567	parallel
Strand 9	A	351	356	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	24	first strand
Strand 2	B	161	162	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	89	first strand
Strand 2	B	207	208	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	199	first strand
Strand 2	B	416	417	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	335	336	first strand
Strand 2	B	343	344	anti-parallel
Strand 3	B	347	348	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	351	356	first strand
Strand 2	B	386	389	parallel
Strand 3	B	408	412	parallel
Strand 4	B	453	457	parallel
Strand 5	B	484	486	parallel
Strand 6	B	498	499	parallel
Strand 7	B	533	538	parallel
Strand 8	B	562	567	parallel
Strand 9	B	351	356	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	24	first strand
Strand 2	C	161	162	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	89	first strand
Strand 2	C	207	208	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	199	first strand
Strand 2	C	416	417	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	335	336	first strand
Strand 2	C	343	344	anti-parallel
Strand 3	C	347	348	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	351	356	first strand
Strand 2	C	386	389	parallel
Strand 3	C	408	412	parallel
Strand 4	C	453	457	parallel
Strand 5	C	484	486	parallel
Strand 6	C	498	499	parallel
Strand 7	C	533	538	parallel
Strand 8	C	562	567	parallel
Strand 9	C	351	356	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	24	first strand
Strand 2	D	161	162	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	89	first strand
Strand 2	D	207	208	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	199	first strand
Strand 2	D	416	417	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	335	336	first strand
Strand 2	D	343	344	anti-parallel
Strand 3	D	347	348	anti-parallel

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There are 9 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	351	356	first strand
Strand 2	D	386	389	parallel
Strand 3	D	408	412	parallel
Strand 4	D	453	457	parallel
Strand 5	D	484	486	parallel
Strand 6	D	498	499	parallel
Strand 7	D	533	538	parallel
Strand 8	D	562	567	parallel
Strand 9	D	351	356	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Q7Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q7Y