Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q80

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Q80 entry

There are 2 chains in PDB entry 8Q80 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 29	LYS 371
B	ILE 29	LYS 371

There are no helices in PDB entry 8Q80

There are 20 sheets in PDB entry 8Q80. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	39	first strand
Strand 2	A	45	51	anti-parallel
Strand 3	A	56	60	anti-parallel
Strand 4	A	74	75	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	39	first strand
Strand 2	A	45	51	anti-parallel
Strand 3	A	364	365	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	88	first strand
Strand 2	A	94	99	anti-parallel
Strand 3	A	105	109	anti-parallel
Strand 4	A	121	124	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	135	first strand
Strand 2	A	141	146	anti-parallel
Strand 3	A	152	159	anti-parallel
Strand 4	A	162	165	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	135	first strand
Strand 2	A	141	146	anti-parallel
Strand 3	A	152	159	anti-parallel
Strand 4	A	169	170	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	183	first strand
Strand 2	A	189	194	anti-parallel
Strand 3	A	200	204	anti-parallel
Strand 4	A	217	218	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	231	first strand
Strand 2	A	237	242	anti-parallel
Strand 3	A	248	255	anti-parallel
Strand 4	A	258	261	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	231	first strand
Strand 2	A	237	242	anti-parallel
Strand 3	A	248	255	anti-parallel
Strand 4	A	265	266	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	279	first strand
Strand 2	A	285	290	anti-parallel
Strand 3	A	296	300	anti-parallel
Strand 4	A	313	316	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	327	first strand
Strand 2	A	333	338	anti-parallel
Strand 3	A	344	348	anti-parallel
Strand 4	A	358	359	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	39	first strand
Strand 2	B	45	51	anti-parallel
Strand 3	B	56	60	anti-parallel
Strand 4	B	74	75	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	39	first strand
Strand 2	B	45	51	anti-parallel
Strand 3	B	364	365	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	88	first strand
Strand 2	B	94	99	anti-parallel
Strand 3	B	105	109	anti-parallel
Strand 4	B	121	122	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	135	first strand
Strand 2	B	141	146	anti-parallel
Strand 3	B	152	159	anti-parallel
Strand 4	B	162	165	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	135	first strand
Strand 2	B	141	146	anti-parallel
Strand 3	B	152	159	anti-parallel
Strand 4	B	169	170	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	183	first strand
Strand 2	B	189	194	anti-parallel
Strand 3	B	200	204	anti-parallel
Strand 4	B	217	218	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	231	first strand
Strand 2	B	237	242	anti-parallel
Strand 3	B	248	255	anti-parallel
Strand 4	B	258	261	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	231	first strand
Strand 2	B	237	242	anti-parallel
Strand 3	B	248	255	anti-parallel
Strand 4	B	265	268	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	279	first strand
Strand 2	B	285	290	anti-parallel
Strand 3	B	296	300	anti-parallel
Strand 4	B	313	316	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	324	327	first strand
Strand 2	B	333	338	anti-parallel
Strand 3	B	344	348	anti-parallel
Strand 4	B	358	359	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Q80

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q80