Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q83

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Q83 entry

There are 4 chains in PDB entry 8Q83 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 23	ILE 370
B	GLU 23	ILE 370
C	ILE 29	ILE 370
D	ILE 29	ILE 370

There are no helices in PDB entry 8Q83

There are 39 sheets in PDB entry 8Q83. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	39	first strand
Strand 2	A	45	51	anti-parallel
Strand 3	A	56	60	anti-parallel
Strand 4	A	73	76	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	39	first strand
Strand 2	A	45	51	anti-parallel
Strand 3	A	364	365	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	87	first strand
Strand 2	A	93	98	anti-parallel
Strand 3	A	104	108	anti-parallel
Strand 4	A	120	121	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	134	first strand
Strand 2	A	140	145	anti-parallel
Strand 3	A	151	158	anti-parallel
Strand 4	A	161	164	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	134	first strand
Strand 2	A	140	145	anti-parallel
Strand 3	A	151	158	anti-parallel
Strand 4	A	168	171	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	182	first strand
Strand 2	A	188	193	anti-parallel
Strand 3	A	199	203	anti-parallel
Strand 4	A	216	217	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	230	first strand
Strand 2	A	236	241	anti-parallel
Strand 3	A	247	251	anti-parallel
Strand 4	A	264	267	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	278	first strand
Strand 2	A	284	289	anti-parallel
Strand 3	A	295	299	anti-parallel
Strand 4	A	312	313	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	326	first strand
Strand 2	A	332	337	anti-parallel
Strand 3	A	343	350	anti-parallel
Strand 4	A	353	354	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	326	first strand
Strand 2	A	332	337	anti-parallel
Strand 3	A	343	350	anti-parallel
Strand 4	A	358	359	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	39	first strand
Strand 2	B	45	51	anti-parallel
Strand 3	B	56	60	anti-parallel
Strand 4	B	73	74	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	39	first strand
Strand 2	B	45	51	anti-parallel
Strand 3	B	364	365	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	87	first strand
Strand 2	B	93	98	anti-parallel
Strand 3	B	104	108	anti-parallel
Strand 4	B	120	121	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	134	first strand
Strand 2	B	140	145	anti-parallel
Strand 3	B	151	158	anti-parallel
Strand 4	B	161	164	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	134	first strand
Strand 2	B	140	145	anti-parallel
Strand 3	B	151	158	anti-parallel
Strand 4	B	168	171	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	182	first strand
Strand 2	B	188	193	anti-parallel
Strand 3	B	199	203	anti-parallel
Strand 4	B	216	219	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	230	first strand
Strand 2	B	236	241	anti-parallel
Strand 3	B	247	251	anti-parallel
Strand 4	B	264	265	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	295	299	anti-parallel
Strand 4	B	312	313	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	326	first strand
Strand 2	B	332	337	anti-parallel
Strand 3	B	343	350	anti-parallel
Strand 4	B	353	354	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	326	first strand
Strand 2	B	332	337	anti-parallel
Strand 3	B	343	350	anti-parallel
Strand 4	B	358	359	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	39	first strand
Strand 2	C	45	51	anti-parallel
Strand 3	C	56	60	anti-parallel
Strand 4	C	73	76	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	39	first strand
Strand 2	C	45	51	anti-parallel
Strand 3	C	364	365	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	87	first strand
Strand 2	C	93	98	anti-parallel
Strand 3	C	104	108	anti-parallel
Strand 4	C	120	121	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	134	first strand
Strand 2	C	140	145	anti-parallel
Strand 3	C	151	158	anti-parallel
Strand 4	C	161	164	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	134	first strand
Strand 2	C	140	145	anti-parallel
Strand 3	C	151	158	anti-parallel
Strand 4	C	168	171	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	182	first strand
Strand 2	C	188	193	anti-parallel
Strand 3	C	199	203	anti-parallel
Strand 4	C	216	217	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	230	first strand
Strand 2	C	236	241	anti-parallel
Strand 3	C	247	251	anti-parallel
Strand 4	C	264	267	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	275	278	first strand
Strand 2	C	284	289	anti-parallel
Strand 3	C	295	299	anti-parallel
Strand 4	C	312	315	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	323	326	first strand
Strand 2	C	332	337	anti-parallel
Strand 3	C	343	350	anti-parallel
Strand 4	C	353	354	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	323	326	first strand
Strand 2	C	332	337	anti-parallel
Strand 3	C	343	350	anti-parallel
Strand 4	C	358	361	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	39	first strand
Strand 2	D	45	51	anti-parallel
Strand 3	D	56	60	anti-parallel
Strand 4	D	73	74	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	39	first strand
Strand 2	D	45	51	anti-parallel
Strand 3	D	364	365	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	87	first strand
Strand 2	D	93	98	anti-parallel
Strand 3	D	104	108	anti-parallel
Strand 4	D	120	121	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	134	first strand
Strand 2	D	140	145	anti-parallel
Strand 3	D	151	158	anti-parallel
Strand 4	D	161	164	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	134	first strand
Strand 2	D	140	145	anti-parallel
Strand 3	D	151	158	anti-parallel
Strand 4	D	168	171	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	179	182	first strand
Strand 2	D	188	193	anti-parallel
Strand 3	D	199	203	anti-parallel
Strand 4	D	216	219	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	227	230	first strand
Strand 2	D	236	241	anti-parallel
Strand 3	D	247	251	anti-parallel
Strand 4	D	264	267	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	275	278	first strand
Strand 2	D	284	289	anti-parallel
Strand 3	D	295	299	anti-parallel
Strand 4	D	312	313	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	323	326	first strand
Strand 2	D	332	337	anti-parallel
Strand 3	D	343	347	anti-parallel
Strand 4	D	358	359	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Q83

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q83