Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q85


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Q85 entry

There are 12 chains in PDB entry 8Q85 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
F
 ASN 434SER 663
G
 LYS 270LEU 447
U
 ASN 57GLY 151
V
 THR 60GLU 176
W
 MET 1GLU 133
X
 ILE 13ALA 80
Y
 MET 1LEU 72
Z
 MET 1LYS 94
a
 GLU 3HIS 265
b
 MET 1VAL 70
c
 MET 1MET 64
d
 MET 1MET 108
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 8Q85. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
F
434 478Right-handed alpha
Helix 2
AA2
F
484 489Right-handed alpha
Helix 3
AA3
F
506 511Right-handed alpha
Helix 4
AA4
F
520 663Right-handed alpha
Helix 5
AA5
G
271 307Right-handed alpha
Helix 6
AA6
G
307 337Right-handed alpha
Helix 7
AA7
G
339 386Right-handed alpha
Helix 8
AA8
G
386 400Right-handed alpha
Helix 9
AA9
G
405 446Right-handed alpha
Helix 10
AB1
U
58 110Right-handed alpha
Helix 11
AB2
U
120 151Right-handed alpha
Helix 12
AB3
V
61 125Right-handed alpha
Helix 13
AB4
V
126 143Right-handed alpha
Helix 14
AB5
V
146 150Right-handed 310
Helix 15
AB6
V
151 176Right-handed alpha
Helix 16
AB7
W
3 67Right-handed alpha
Helix 17
AB8
W
68 73Right-handed alpha
Helix 18
AB9
W
74 78Right-handed 310
Helix 19
AC1
W
80 84Right-handed 310
Helix 20
AC2
X
14 57Right-handed alpha
Helix 21
AC3
X
58 67Right-handed alpha
Helix 22
AC4
X
72 80Right-handed alpha
Helix 23
AC5
Y
4 41Right-handed alpha
Helix 24
AC6
Y
41 65Right-handed alpha
Helix 25
AC7
Z
6 35Right-handed alpha
Helix 26
AC8
Z
53 65Right-handed alpha
Helix 27
AC9
Z
68 94Right-handed alpha
Helix 28
AD1
a
4 22Right-handed alpha
Helix 29
AD2
a
28 37Right-handed alpha
Helix 30
AD3
a
40 51Right-handed alpha
Helix 31
AD4
a
56 63Right-handed alpha
Helix 32
AD5
a
81 99Right-handed alpha
Helix 33
AD6
a
111 125Right-handed alpha
Helix 34
AD7
a
158 168Right-handed alpha
Helix 35
AD8
a
171 183Right-handed alpha
Helix 36
AD9
a
203 205Right-handed 310
Helix 37
AE1
a
206 221Right-handed alpha
Helix 38
AE2
a
223 265Right-handed alpha
Helix 39
AE3
b
3 38Right-handed alpha
Helix 40
AE4
b
38 57Right-handed alpha
Helix 41
AE5
b
57 69Right-handed alpha
Helix 42
AE6
c
2 40Right-handed alpha
Helix 43
AE7
c
44 63Right-handed alpha
Helix 44
AE8
d
2 40Right-handed alpha
Helix 45
AE9
d
52 65Right-handed alpha
Helix 46
AF1
d
65 108Right-handed alpha
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There are 4 sheets in PDB entry 8Q85. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
112 113first strand
Strand 2
d
44 45anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
52 54first strand
Strand 2
W
124 128parallel
Strand 3
d
47 51anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
64 67first strand
Strand 2
a
72 75anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
185 189first strand
Strand 2
a
197 201anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il