Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q86

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Q86 entry

There are 8 chains in PDB entry 8Q86 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 15	GLU 60
B	PHE 62	SER 177
C	MET 1	SER 218
D	MET 1	GLU 223
E	MET 1	GLU 223
F	MET 1	GLU 223
G	MET 1	GLU 223
H	MET 1	SER 218

There are 56 helices in PDB entry 8Q86. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	162	166	Right-handed alpha
Helix 2	AA2	B	169	177	Right-handed alpha
Helix 3	AA3	C	6	14	Right-handed alpha
Helix 4	AA4	C	16	25	Right-handed alpha
Helix 5	AA5	C	27	35	Right-handed alpha
Helix 6	AA6	C	44	55	Right-handed alpha
Helix 7	AA7	C	57	62	Right-handed alpha
Helix 8	AA8	C	150	160	Right-handed alpha
Helix 9	AA9	C	161	185	Right-handed alpha
Helix 10	AB1	C	207	212	Right-handed alpha
Helix 11	AB2	D	5	14	Right-handed alpha
Helix 12	AB3	D	16	24	Right-handed alpha
Helix 13	AB4	D	27	34	Right-handed alpha
Helix 14	AB5	D	44	54	Right-handed alpha
Helix 15	AB6	D	57	61	Right-handed 310
Helix 16	AB7	D	151	159	Right-handed alpha
Helix 17	AB8	D	161	187	Right-handed alpha
Helix 18	AB9	D	204	212	Right-handed alpha
Helix 19	AC1	E	6	14	Right-handed alpha
Helix 20	AC2	E	16	24	Right-handed alpha
Helix 21	AC3	E	27	36	Right-handed alpha
Helix 22	AC4	E	44	55	Right-handed alpha
Helix 23	AC5	E	57	61	Right-handed alpha
Helix 24	AC6	E	87	91	Right-handed 310
Helix 25	AC7	E	93	97	Right-handed alpha
Helix 26	AC8	E	150	158	Right-handed alpha
Helix 27	AC9	E	161	188	Right-handed alpha
Helix 28	AD1	E	204	212	Right-handed alpha
Helix 29	AD2	F	5	14	Right-handed alpha
Helix 30	AD3	F	16	24	Right-handed alpha
Helix 31	AD4	F	27	36	Right-handed alpha
Helix 32	AD5	F	44	55	Right-handed alpha
Helix 33	AD6	F	57	61	Right-handed alpha
Helix 34	AD7	F	93	98	Right-handed alpha
Helix 35	AD8	F	147	149	Right-handed 310
Helix 36	AD9	F	150	158	Right-handed alpha
Helix 37	AE1	F	161	188	Right-handed alpha
Helix 38	AE2	F	204	212	Right-handed alpha
Helix 39	AE3	G	5	14	Right-handed alpha
Helix 40	AE4	G	16	24	Right-handed alpha
Helix 41	AE5	G	27	35	Right-handed alpha
Helix 42	AE6	G	44	54	Right-handed alpha
Helix 43	AE7	G	57	61	Right-handed alpha
Helix 44	AE8	G	93	97	Right-handed alpha
Helix 45	AE9	G	151	160	Right-handed alpha
Helix 46	AF1	G	161	186	Right-handed alpha
Helix 47	AF2	G	204	210	Right-handed alpha
Helix 48	AF3	H	5	14	Right-handed alpha
Helix 49	AF4	H	16	25	Right-handed alpha
Helix 50	AF5	H	27	35	Right-handed alpha
Helix 51	AF6	H	44	54	Right-handed alpha
Helix 52	AF7	H	57	61	Right-handed alpha
Helix 53	AF8	H	93	98	Right-handed alpha
Helix 54	AF9	H	154	160	Right-handed alpha
Helix 55	AG1	H	161	181	Right-handed alpha
Helix 56	AG2	H	183	185	Right-handed 310

There are 20 sheets in PDB entry 8Q86. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	43	first strand
Strand 2	D	41	43	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	108	109	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	126	first strand
Strand 2	C	143	144	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	141	first strand
Strand 2	C	213	215	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	73	first strand
Strand 2	D	98	112	anti-parallel
Strand 3	D	78	83	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	73	first strand
Strand 2	D	98	112	anti-parallel
Strand 3	D	118	131	anti-parallel
Strand 4	D	139	144	anti-parallel
Strand 5	D	213	216	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	4	first strand
Strand 2	E	62	64	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	43	first strand
Strand 2	F	41	43	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	73	first strand
Strand 2	E	98	109	anti-parallel
Strand 3	E	78	83	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	73	first strand
Strand 2	E	98	109	anti-parallel
Strand 3	E	121	134	anti-parallel
Strand 4	E	137	144	anti-parallel
Strand 5	E	213	215	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	4	first strand
Strand 2	F	62	64	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	68	73	first strand
Strand 2	F	99	112	anti-parallel
Strand 3	F	78	82	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	68	73	first strand
Strand 2	F	99	112	anti-parallel
Strand 3	F	121	130	anti-parallel
Strand 4	F	140	144	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	4	first strand
Strand 2	G	62	64	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	41	43	first strand
Strand 2	H	41	43	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	71	73	first strand
Strand 2	G	98	109	anti-parallel
Strand 3	G	78	83	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	71	73	first strand
Strand 2	G	98	109	anti-parallel
Strand 3	G	121	129	anti-parallel
Strand 4	G	140	144	anti-parallel
Strand 5	G	214	216	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	4	first strand
Strand 2	H	62	64	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	70	72	first strand
Strand 2	H	107	110	anti-parallel
Strand 3	H	120	123	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	129	131	first strand
Strand 2	H	139	141	anti-parallel
Strand 3	H	213	215	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Q86

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q86