Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q8H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Q8H entry

There are 2 chains in PDB entry 8Q8H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 7	ALA 542
B	ASP 7	THR 86

There are 57 helices in PDB entry 8Q8H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	66	70	Right-handed 310
Helix 2	AA2	A	89	93	Right-handed 310
Helix 3	AA3	A	181	190	Right-handed alpha
Helix 4	AA4	A	195	212	Right-handed alpha
Helix 5	AA5	A	250	264	Right-handed alpha
Helix 6	AA6	A	305	326	Right-handed alpha
Helix 7	AA7	A	344	359	Right-handed alpha
Helix 8	AA8	A	370	374	Right-handed 310
Helix 9	AA9	A	385	395	Right-handed alpha
Helix 10	AB1	A	419	425	Right-handed alpha
Helix 11	AB2	A	425	433	Right-handed alpha
Helix 12	AB3	A	487	506	Right-handed alpha
Helix 13	AB4	A	512	516	Right-handed 310
Helix 14	AB5	A	527	542	Right-handed alpha
Helix 15	AB6	B	66	70	Right-handed 310
Helix 16	AB7	B	89	93	Right-handed 310
Helix 17	AB8	B	181	190	Right-handed alpha
Helix 18	AB9	B	195	212	Right-handed alpha
Helix 19	AC1	B	250	264	Right-handed alpha
Helix 20	AC2	B	305	326	Right-handed alpha
Helix 21	AC3	B	344	359	Right-handed alpha
Helix 22	AC4	B	370	374	Right-handed 310
Helix 23	AC5	B	385	387	Right-handed 310
Helix 24	AC6	B	388	395	Right-handed alpha
Helix 25	AC7	B	419	425	Right-handed alpha
Helix 26	AC8	B	425	433	Right-handed alpha
Helix 27	AC9	B	487	506	Right-handed alpha
Helix 28	AD1	B	512	516	Right-handed 310
Helix 29	AD2	B	527	542	Right-handed alpha
Helix 30	AD3	C	66	70	Right-handed 310
Helix 31	AD4	C	89	93	Right-handed 310
Helix 32	AD5	C	181	190	Right-handed alpha
Helix 33	AD6	C	195	212	Right-handed alpha
Helix 34	AD7	C	250	264	Right-handed alpha
Helix 35	AD8	C	305	327	Right-handed alpha
Helix 36	AD9	C	344	359	Right-handed alpha
Helix 37	AE1	C	370	374	Right-handed 310
Helix 38	AE2	C	385	395	Right-handed alpha
Helix 39	AE3	C	419	425	Right-handed alpha
Helix 40	AE4	C	425	433	Right-handed alpha
Helix 41	AE5	C	487	506	Right-handed alpha
Helix 42	AE6	C	512	516	Right-handed 310
Helix 43	AE7	C	527	542	Right-handed alpha
Helix 44	AE8	D	66	70	Right-handed 310
Helix 45	AE9	D	89	93	Right-handed 310
Helix 46	AF1	D	181	190	Right-handed alpha
Helix 47	AF2	D	195	211	Right-handed alpha
Helix 48	AF3	D	250	264	Right-handed alpha
Helix 49	AF4	D	305	327	Right-handed alpha
Helix 50	AF5	D	344	359	Right-handed alpha
Helix 51	AF6	D	370	374	Right-handed 310
Helix 52	AF7	D	385	395	Right-handed alpha
Helix 53	AF8	D	419	425	Right-handed alpha
Helix 54	AF9	D	425	433	Right-handed alpha
Helix 55	AG1	D	487	506	Right-handed alpha
Helix 56	AG2	D	512	516	Right-handed 310
Helix 57	AG3	D	527	542	Right-handed alpha

There are 36 sheets in PDB entry 8Q8H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	16	first strand
Strand 2	A	41	51	anti-parallel
Strand 3	A	120	129	anti-parallel
Strand 4	A	72	81	anti-parallel
Strand 5	A	101	108	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	39	first strand
Strand 2	A	151	167	parallel
Strand 3	A	136	148	anti-parallel
Strand 4	A	57	64	anti-parallel
Strand 5	A	112	115	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	178	first strand
Strand 2	A	437	440	parallel
Strand 3	A	401	402	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	219	first strand
Strand 2	A	267	270	parallel
Strand 3	A	332	333	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	242	first strand
Strand 2	A	245	249	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	275	first strand
Strand 2	A	281	282	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	289	first strand
Strand 2	A	292	295	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	366	first strand
Strand 2	A	381	382	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	478	479	first strand
Strand 2	A	484	485	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	16	first strand
Strand 2	B	41	51	anti-parallel
Strand 3	B	120	129	anti-parallel
Strand 4	B	72	81	anti-parallel
Strand 5	B	101	108	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	39	first strand
Strand 2	B	151	167	parallel
Strand 3	B	136	148	anti-parallel
Strand 4	B	57	64	anti-parallel
Strand 5	B	112	115	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	178	first strand
Strand 2	B	437	440	parallel
Strand 3	B	401	402	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	219	first strand
Strand 2	B	267	272	parallel
Strand 3	B	332	335	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	242	first strand
Strand 2	B	245	249	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	275	first strand
Strand 2	B	281	282	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	286	289	first strand
Strand 2	B	292	295	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	366	first strand
Strand 2	B	381	382	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	478	480	first strand
Strand 2	B	483	485	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	16	first strand
Strand 2	C	41	51	anti-parallel
Strand 3	C	120	129	anti-parallel
Strand 4	C	72	81	anti-parallel
Strand 5	C	101	108	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	39	first strand
Strand 2	C	151	167	parallel
Strand 3	C	136	148	anti-parallel
Strand 4	C	57	64	anti-parallel
Strand 5	C	112	115	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	178	first strand
Strand 2	C	437	440	parallel
Strand 3	C	401	402	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	219	first strand
Strand 2	C	267	270	parallel
Strand 3	C	332	333	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	242	first strand
Strand 2	C	245	249	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	274	275	first strand
Strand 2	C	281	282	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	286	289	first strand
Strand 2	C	292	295	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	365	366	first strand
Strand 2	C	381	382	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	478	480	first strand
Strand 2	C	483	485	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	16	first strand
Strand 2	D	41	51	anti-parallel
Strand 3	D	120	129	anti-parallel
Strand 4	D	72	81	anti-parallel
Strand 5	D	101	108	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	39	first strand
Strand 2	D	151	167	parallel
Strand 3	D	136	148	anti-parallel
Strand 4	D	57	64	anti-parallel
Strand 5	D	112	115	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	175	178	first strand
Strand 2	D	437	440	parallel
Strand 3	D	401	402	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	219	first strand
Strand 2	D	267	270	parallel
Strand 3	D	332	333	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	242	first strand
Strand 2	D	245	249	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	274	275	first strand
Strand 2	D	281	282	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	286	289	first strand
Strand 2	D	292	295	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	365	366	first strand
Strand 2	D	381	382	parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	478	480	first strand
Strand 2	D	483	485	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Q8H

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q8H