Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q8I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Q8I entry

There is 1 chain in PDB entry 8Q8I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1SER 279
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8Q8I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 6Right-handed 310
Helix 2
AA2
A
15 25Right-handed alpha
Helix 3
AA3
A
35 40Right-handed alpha
Helix 4
AA4
A
77 79Right-handed 310
Helix 5
AA5
A
80 85Right-handed alpha
Helix 6
AA6
A
119 126Right-handed alpha
Helix 7
AA7
A
127 137Right-handed alpha
Helix 8
AA8
A
150 153Right-handed 310
Helix 9
AA9
A
154 166Right-handed alpha
Helix 10
AB1
A
179 192Right-handed alpha
Helix 11
AB2
A
206 215Right-handed alpha
Helix 12
AB3
A
224 228Right-handed 310
Helix 13
AB4
A
245 259Right-handed alpha
Helix 14
AB5
A
264 266Right-handed 310
Helix 15
AB6
A
267 279Right-handed alpha
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There are 5 sheets in PDB entry 8Q8I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
0 1first strand
Strand 2
A
261 262anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 34first strand
Strand 2
A
66 70parallel
Strand 3
A
91 94parallel
Strand 4
A
104 106parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
58 60anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 147first strand
Strand 2
A
171 173parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 197first strand
Strand 2
A
218 222parallel
Strand 3
A
236 238parallel
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