Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q8Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Q8Q entry

There are 5 chains in PDB entry 8Q8Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 162	VAL 483
B	ALA 162	VAL 483
C	ALA 162	VAL 483
D	ALA 162	VAL 483
E	ALA 162	VAL 483

There are 45 helices in PDB entry 8Q8Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	187	196	Right-handed alpha
Helix 2	AA2	A	198	207	Right-handed alpha
Helix 3	AA3	A	247	263	Right-handed alpha
Helix 4	AA4	A	273	308	Right-handed alpha
Helix 5	AA5	A	313	347	Right-handed alpha
Helix 6	AA6	A	348	354	Right-handed alpha
Helix 7	AA7	A	356	361	Right-handed alpha
Helix 8	AA8	A	371	441	Right-handed alpha
Helix 9	AA9	A	452	481	Right-handed alpha
Helix 10	AB1	B	187	196	Right-handed alpha
Helix 11	AB2	B	198	207	Right-handed alpha
Helix 12	AB3	B	247	263	Right-handed alpha
Helix 13	AB4	B	273	308	Right-handed alpha
Helix 14	AB5	B	313	347	Right-handed alpha
Helix 15	AB6	B	348	354	Right-handed alpha
Helix 16	AB7	B	356	361	Right-handed alpha
Helix 17	AB8	B	371	441	Right-handed alpha
Helix 18	AB9	B	452	481	Right-handed alpha
Helix 19	AC1	C	187	196	Right-handed alpha
Helix 20	AC2	C	198	207	Right-handed alpha
Helix 21	AC3	C	247	263	Right-handed alpha
Helix 22	AC4	C	273	308	Right-handed alpha
Helix 23	AC5	C	313	347	Right-handed alpha
Helix 24	AC6	C	348	354	Right-handed alpha
Helix 25	AC7	C	356	361	Right-handed alpha
Helix 26	AC8	C	371	441	Right-handed alpha
Helix 27	AC9	C	452	481	Right-handed alpha
Helix 28	AD1	D	187	196	Right-handed alpha
Helix 29	AD2	D	198	207	Right-handed alpha
Helix 30	AD3	D	247	263	Right-handed alpha
Helix 31	AD4	D	273	308	Right-handed alpha
Helix 32	AD5	D	313	347	Right-handed alpha
Helix 33	AD6	D	348	354	Right-handed alpha
Helix 34	AD7	D	356	361	Right-handed alpha
Helix 35	AD8	D	371	441	Right-handed alpha
Helix 36	AD9	D	452	481	Right-handed alpha
Helix 37	AE1	E	187	196	Right-handed alpha
Helix 38	AE2	E	198	207	Right-handed alpha
Helix 39	AE3	E	247	263	Right-handed alpha
Helix 40	AE4	E	273	308	Right-handed alpha
Helix 41	AE5	E	313	347	Right-handed alpha
Helix 42	AE6	E	348	354	Right-handed alpha
Helix 43	AE7	E	356	361	Right-handed alpha
Helix 44	AE8	E	371	441	Right-handed alpha
Helix 45	AE9	E	452	481	Right-handed alpha

There are 5 sheets in PDB entry 8Q8Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	186	first strand
Strand 2	A	168	173	anti-parallel
Strand 3	A	236	240	anti-parallel
Strand 4	A	228	231	anti-parallel
Strand 5	A	219	223	anti-parallel
Strand 6	A	212	216	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	186	first strand
Strand 2	B	168	173	anti-parallel
Strand 3	B	236	240	anti-parallel
Strand 4	B	228	231	anti-parallel
Strand 5	B	219	223	anti-parallel
Strand 6	B	212	216	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	186	first strand
Strand 2	C	168	173	anti-parallel
Strand 3	C	236	240	anti-parallel
Strand 4	C	228	231	anti-parallel
Strand 5	C	219	223	anti-parallel
Strand 6	C	212	216	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	181	186	first strand
Strand 2	D	168	173	anti-parallel
Strand 3	D	236	240	anti-parallel
Strand 4	D	228	231	anti-parallel
Strand 5	D	219	223	anti-parallel
Strand 6	D	212	216	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	181	186	first strand
Strand 2	E	168	173	anti-parallel
Strand 3	E	236	240	anti-parallel
Strand 4	E	228	231	anti-parallel
Strand 5	E	219	223	anti-parallel
Strand 6	E	212	216	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Q8Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q8Q