Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q9C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Q9C entry

There are 6 chains in PDB entry 8Q9C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 305	ARG 379
C	SER 305	ARG 379
D	SER 305	ARG 379
A	SER 305	ARG 379
E	SER 305	ARG 379
F	SER 305	ARG 379

There are no helices in PDB entry 8Q9C

There are 17 sheets in PDB entry 8Q9C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	306	310	first strand
Strand 2	D	306	310	parallel
Strand 3	C	306	310	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	314	first strand
Strand 2	D	313	314	parallel
Strand 3	C	313	314	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	325	first strand
Strand 2	D	318	325	parallel
Strand 3	C	318	325	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	342	first strand
Strand 2	D	337	342	parallel
Strand 3	C	337	342	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	346	first strand
Strand 2	D	345	346	parallel
Strand 3	C	345	346	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	362	first strand
Strand 2	D	350	362	parallel
Strand 3	C	350	362	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	369	371	first strand
Strand 2	D	369	371	parallel
Strand 3	C	369	371	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	375	first strand
Strand 2	D	374	375	parallel
Strand 3	C	374	375	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	310	first strand
Strand 2	F	306	310	parallel
Strand 3	E	306	310	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	314	first strand
Strand 2	F	313	314	parallel
Strand 3	E	313	314	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	320	first strand
Strand 2	F	318	320	parallel
Strand 3	E	318	320	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	325	first strand
Strand 2	F	323	325	parallel
Strand 3	E	323	325	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	342	first strand
Strand 2	F	337	342	parallel
Strand 3	E	337	342	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	346	first strand
Strand 2	F	345	346	parallel
Strand 3	E	345	346	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	362	first strand
Strand 2	F	350	362	parallel
Strand 3	E	350	362	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	369	371	first strand
Strand 2	F	369	371	parallel
Strand 3	E	369	371	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	375	first strand
Strand 2	F	374	375	parallel
Strand 3	E	374	375	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Q9C

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q9C