Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q9N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Q9N entry

There are 5 chains in PDB entry 8Q9N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2GLY 92
B
 GLY 2ASN 94
K
 A 2 A 15
L
 T 2 T 15
X
 TRP 138LYS 154
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 8Q9N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 40Right-handed alpha
Helix 2
AA2
A
61 72Right-handed alpha
Helix 3
AA3
A
81 92Right-handed alpha
Helix 4
AA4
B
13 40Right-handed alpha
Helix 5
AA5
B
61 72Right-handed alpha
Helix 6
AA6
B
80 91Right-handed alpha
Helix 7
AA7
X
141 154Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8Q9N.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 80first strand
Strand 2
B
54 58parallel
Strand 3
B
42 48anti-parallel
Strand 4
A
42 48anti-parallel
Strand 5
A
54 58anti-parallel
Strand 6
B
77 79parallel
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