Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q9T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Q9T entry

There are 5 chains in PDB entry 8Q9T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 12	LEU 1287
C	SER 2	GLY 395
D	LYS 3	PHE 391
E	SER 281	PHE 1432
B	U 1	U 4

There are122 helices in PDB entry 8Q9T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	19	Right-handed alpha
Helix 2	AA2	A	48	56	Right-handed alpha
Helix 3	AA3	A	63	71	Right-handed alpha
Helix 4	AA4	A	87	92	Right-handed 310
Helix 5	AA5	A	178	183	Right-handed alpha
Helix 6	AA6	A	271	280	Right-handed alpha
Helix 7	AA7	A	331	344	Right-handed alpha
Helix 8	AA8	A	357	371	Right-handed alpha
Helix 9	AA9	A	384	396	Right-handed alpha
Helix 10	AB1	A	421	430	Right-handed alpha
Helix 11	AB2	A	432	436	Right-handed 310
Helix 12	AB3	A	458	465	Right-handed alpha
Helix 13	AB4	A	480	493	Right-handed alpha
Helix 14	AB5	A	530	539	Right-handed alpha
Helix 15	AB6	A	612	625	Right-handed alpha
Helix 16	AB7	A	635	645	Right-handed alpha
Helix 17	AB8	A	653	668	Right-handed alpha
Helix 18	AB9	A	669	671	Right-handed 310
Helix 19	AC1	A	672	677	Right-handed alpha
Helix 20	AC2	A	678	689	Right-handed alpha
Helix 21	AC3	A	700	714	Right-handed alpha
Helix 22	AC4	A	723	726	Right-handed 310
Helix 23	AC5	A	753	762	Right-handed alpha
Helix 24	AC6	A	785	794	Right-handed alpha
Helix 25	AC7	A	807	817	Right-handed alpha
Helix 26	AC8	A	821	828	Right-handed alpha
Helix 27	AC9	A	842	855	Right-handed alpha
Helix 28	AD1	A	861	865	Right-handed 310
Helix 29	AD2	A	867	889	Right-handed alpha
Helix 30	AD3	A	890	891	Right-handed 310
Helix 31	AD4	A	892	893	Right-handed 310
Helix 32	AD5	A	894	899	Right-handed alpha
Helix 33	AD6	A	954	962	Right-handed alpha
Helix 34	AD7	A	991	998	Right-handed alpha
Helix 35	AD8	A	999	1016	Right-handed alpha
Helix 36	AD9	A	1024	1028	Right-handed 310
Helix 37	AE1	A	1029	1048	Right-handed alpha
Helix 38	AE2	A	1049	1053	Right-handed 310
Helix 39	AE3	A	1056	1060	Right-handed 310
Helix 40	AE4	A	1061	1078	Right-handed alpha
Helix 41	AE5	A	1088	1102	Right-handed alpha
Helix 42	AE6	A	1112	1119	Right-handed alpha
Helix 43	AE7	A	1125	1135	Right-handed alpha
Helix 44	AE8	A	1136	1141	Right-handed 310
Helix 45	AE9	A	1142	1150	Right-handed alpha
Helix 46	AF1	A	1151	1154	Right-handed 310
Helix 47	AF2	A	1168	1192	Right-handed alpha
Helix 48	AF3	A	1197	1202	Right-handed alpha
Helix 49	AF4	A	1211	1221	Right-handed alpha
Helix 50	AF5	A	1223	1231	Right-handed alpha
Helix 51	AF6	A	1234	1260	Right-handed alpha
Helix 52	AF7	A	1261	1276	Right-handed alpha
Helix 53	AF8	A	1277	1282	Right-handed 310
Helix 54	AF9	C	117	121	Right-handed 310
Helix 55	AG1	C	332	336	Right-handed 310
Helix 56	AG2	C	338	342	Right-handed 310
Helix 57	AG3	D	50	53	Right-handed 310
Helix 58	AG4	D	118	122	Right-handed 310
Helix 59	AG5	E	282	292	Right-handed alpha
Helix 60	AG6	E	296	300	Right-handed 310
Helix 61	AG7	E	301	312	Right-handed alpha
Helix 62	AG8	E	315	327	Right-handed alpha
Helix 63	AG9	E	333	341	Right-handed alpha
Helix 64	AH1	E	407	421	Right-handed alpha
Helix 65	AH2	E	424	438	Right-handed alpha
Helix 66	AH3	E	444	461	Right-handed alpha
Helix 67	AH4	E	466	485	Right-handed alpha
Helix 68	AH5	E	489	504	Right-handed alpha
Helix 69	AH6	E	507	521	Right-handed alpha
Helix 70	AH7	E	524	538	Right-handed alpha
Helix 71	AH8	E	541	555	Right-handed alpha
Helix 72	AH9	E	558	565	Right-handed alpha
Helix 73	AI1	E	565	571	Right-handed alpha
Helix 74	AI2	E	576	600	Right-handed alpha
Helix 75	AI3	E	606	624	Right-handed alpha
Helix 76	AI4	E	626	640	Right-handed alpha
Helix 77	AI5	E	644	658	Right-handed alpha
Helix 78	AI6	E	662	674	Right-handed alpha
Helix 79	AI7	E	677	692	Right-handed alpha
Helix 80	AI8	E	696	700	Right-handed 310
Helix 81	AI9	E	702	715	Right-handed alpha
Helix 82	AJ1	E	721	732	Right-handed alpha
Helix 83	AJ2	E	735	750	Right-handed alpha
Helix 84	AJ3	E	751	766	Right-handed alpha
Helix 85	AJ4	E	769	782	Right-handed alpha
Helix 86	AJ5	E	785	800	Right-handed alpha
Helix 87	AJ6	E	803	824	Right-handed alpha
Helix 88	AJ7	E	826	848	Right-handed alpha
Helix 89	AJ8	E	852	863	Right-handed alpha
Helix 90	AJ9	E	864	869	Right-handed alpha
Helix 91	AK1	E	870	876	Right-handed 310
Helix 92	AK2	E	877	888	Right-handed alpha
Helix 93	AK3	E	903	907	Right-handed 310
Helix 94	AK4	E	914	929	Right-handed alpha
Helix 95	AK5	E	941	963	Right-handed alpha
Helix 96	AK6	E	964	982	Right-handed alpha
Helix 97	AK7	E	985	996	Right-handed alpha
Helix 98	AK8	E	1000	1015	Right-handed alpha
Helix 99	AK9	E	1019	1032	Right-handed alpha
Helix 100	AL1	E	1034	1049	Right-handed alpha
Helix 101	AL2	E	1053	1067	Right-handed alpha
Helix 102	AL3	E	1069	1084	Right-handed alpha
Helix 103	AL4	E	1087	1102	Right-handed alpha
Helix 104	AL5	E	1111	1132	Right-handed alpha
Helix 105	AL6	E	1135	1150	Right-handed alpha
Helix 106	AL7	E	1151	1170	Right-handed alpha
Helix 107	AL8	E	1176	1197	Right-handed alpha
Helix 108	AL9	E	1198	1213	Right-handed alpha
Helix 109	AM1	E	1221	1238	Right-handed alpha
Helix 110	AM2	E	1242	1253	Right-handed alpha
Helix 111	AM3	E	1261	1274	Right-handed alpha
Helix 112	AM4	E	1275	1294	Right-handed alpha
Helix 113	AM5	E	1296	1311	Right-handed alpha
Helix 114	AM6	E	1312	1325	Right-handed alpha
Helix 115	AM7	E	1327	1334	Right-handed alpha
Helix 116	AM8	E	1337	1352	Right-handed alpha
Helix 117	AM9	E	1356	1367	Right-handed alpha
Helix 118	AN1	E	1373	1378	Right-handed alpha
Helix 119	AN2	E	1378	1386	Right-handed alpha
Helix 120	AN3	E	1394	1404	Right-handed alpha
Helix 121	AN4	E	1407	1418	Right-handed alpha
Helix 122	AN5	E	1421	1432	Right-handed alpha

There are 21 sheets in PDB entry 8Q9T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	107	first strand
Strand 2	A	114	121	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	305	first strand
Strand 2	A	496	501	parallel
Strand 3	A	346	351	parallel
Strand 4	A	470	475	parallel
Strand 5	A	438	443	parallel
Strand 6	A	374	379	parallel
Strand 7	A	416	420	parallel
Strand 8	A	401	404	parallel
Strand 9	A	409	410	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	519	522	first strand
Strand 2	A	508	513	anti-parallel
Strand 3	A	773	778	parallel
Strand 4	A	735	738	parallel
Strand 5	A	629	632	parallel
Strand 6	A	718	721	parallel
Strand 7	A	692	695	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	742	744	first strand
Strand 2	A	749	751	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	835	838	first strand
Strand 2	A	1082	1084	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	967	976	first strand
Strand 2	A	928	935	anti-parallel
Strand 3	A	914	923	anti-parallel
Strand 4	A	903	908	anti-parallel
Strand 5	A	980	987	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	11	first strand
Strand 2	C	388	393	anti-parallel
Strand 3	C	378	383	anti-parallel
Strand 4	C	357	363	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	24	first strand
Strand 2	C	28	32	anti-parallel
Strand 3	C	37	42	anti-parallel
Strand 4	C	55	59	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	73	first strand
Strand 2	C	81	88	anti-parallel
Strand 3	C	93	99	anti-parallel
Strand 4	C	108	112	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	130	first strand
Strand 2	C	139	145	anti-parallel
Strand 3	C	150	156	anti-parallel
Strand 4	C	172	179	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	189	194	first strand
Strand 2	C	199	204	anti-parallel
Strand 3	C	208	213	anti-parallel
Strand 4	C	219	224	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	241	first strand
Strand 2	C	247	254	anti-parallel
Strand 3	C	257	264	anti-parallel
Strand 4	C	269	274	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	294	299	first strand
Strand 2	C	305	310	anti-parallel
Strand 3	C	314	319	anti-parallel
Strand 4	C	324	330	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	11	first strand
Strand 2	D	388	390	anti-parallel
Strand 3	D	378	383	anti-parallel
Strand 4	D	357	363	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	24	first strand
Strand 2	D	28	33	anti-parallel
Strand 3	D	37	42	anti-parallel
Strand 4	D	55	59	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	72	first strand
Strand 2	D	82	88	anti-parallel
Strand 3	D	93	97	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	130	first strand
Strand 2	D	139	145	anti-parallel
Strand 3	D	150	156	anti-parallel
Strand 4	D	172	173	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	130	first strand
Strand 2	D	139	145	anti-parallel
Strand 3	D	150	156	anti-parallel
Strand 4	D	177	179	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	189	194	first strand
Strand 2	D	199	204	anti-parallel
Strand 3	D	208	213	anti-parallel
Strand 4	D	219	224	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	241	first strand
Strand 2	D	248	253	anti-parallel
Strand 3	D	258	264	anti-parallel
Strand 4	D	269	274	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	294	299	first strand
Strand 2	D	305	310	anti-parallel
Strand 3	D	314	319	anti-parallel
Strand 4	D	324	330	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Q9T

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q9T