Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q9V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Q9V entry

There is 1 chain in PDB entry 8Q9V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 6GLY 548
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8Q9V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 38Right-handed alpha
Helix 2
AA2
A
41 44Right-handed 310
Helix 3
AA3
A
57 71Right-handed alpha
Helix 4
AA4
A
105 109Right-handed 310
Helix 5
AA5
A
110 120Right-handed alpha
Helix 6
AA6
A
138 157Right-handed alpha
Helix 7
AA7
A
176 185Right-handed alpha
Helix 8
AA8
A
195 205Right-handed alpha
Helix 9
AA9
A
214 228Right-handed alpha
Helix 10
AB1
A
239 250Right-handed alpha
Helix 11
AB2
A
275 286Right-handed alpha
Helix 12
AB3
A
286 312Right-handed alpha
Helix 13
AB4
A
321 329Right-handed alpha
Helix 14
AB5
A
331 337Right-handed 310
Helix 15
AB6
A
339 345Right-handed alpha
Helix 16
AB7
A
345 350Right-handed alpha
Helix 17
AB8
A
364 379Right-handed alpha
Helix 18
AB9
A
383 396Right-handed alpha
Helix 19
AC1
A
411 426Right-handed alpha
Helix 20
AC2
A
463 476Right-handed alpha
Helix 21
AC3
A
502 528Right-handed alpha
Helix 22
AC4
A
529 539Right-handed alpha
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There are 4 sheets in PDB entry 8Q9V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
52 53anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 89first strand
Strand 2
A
75 80anti-parallel
Strand 3
A
97 101parallel
Strand 4
A
480 486parallel
Strand 5
A
490 499anti-parallel
Strand 6
A
433 437anti-parallel
Strand 7
A
356 360anti-parallel
Strand 8
A
403 405anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 89first strand
Strand 2
A
75 80anti-parallel
Strand 3
A
97 101parallel
Strand 4
A
480 486parallel
Strand 5
A
490 499anti-parallel
Strand 6
A
445 446anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 211first strand
Strand 2
A
232 237parallel
Strand 3
A
188 193parallel
Strand 4
A
165 169parallel
Strand 5
A
256 257parallel
Strand 6
A
314 315parallel
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