Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q9Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Q9Y entry

There are 2 chains in PDB entry 8Q9Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 43	THR 513
B	ARG 47	PRO 211

There are 24 helices in PDB entry 8Q9Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	57	Right-handed alpha
Helix 2	AA2	A	68	70	Right-handed 310
Helix 3	AA3	A	90	93	Right-handed 310
Helix 4	AA4	A	122	128	Right-handed 310
Helix 5	AA5	A	160	165	Right-handed alpha
Helix 6	AA6	A	215	219	Right-handed 310
Helix 7	AA7	A	235	239	Right-handed 310
Helix 8	AA8	A	258	262	Right-handed 310
Helix 9	AA9	A	271	275	Right-handed 310
Helix 10	AB1	A	378	382	Right-handed 310
Helix 11	AB2	A	390	394	Right-handed 310
Helix 12	AB3	A	465	467	Right-handed 310
Helix 13	AB4	A	501	506	Right-handed alpha
Helix 14	AB5	B	51	57	Right-handed alpha
Helix 15	AB6	B	68	70	Right-handed 310
Helix 16	AB7	B	90	93	Right-handed 310
Helix 17	AB8	B	122	128	Right-handed 310
Helix 18	AB9	B	160	165	Right-handed alpha
Helix 19	AC1	B	215	219	Right-handed 310
Helix 20	AC2	B	235	239	Right-handed 310
Helix 21	AC3	B	257	264	Right-handed alpha
Helix 22	AC4	B	378	382	Right-handed 310
Helix 23	AC5	B	465	467	Right-handed 310
Helix 24	AC6	B	501	506	Right-handed alpha

There are 14 sheets in PDB entry 8Q9Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	88	first strand
Strand 2	A	72	77	anti-parallel
Strand 3	A	62	66	anti-parallel
Strand 4	A	496	497	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	104	first strand
Strand 2	A	114	120	anti-parallel
Strand 3	A	144	149	anti-parallel
Strand 4	A	154	159	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	174	first strand
Strand 2	A	180	185	anti-parallel
Strand 3	A	190	195	anti-parallel
Strand 4	A	200	211	anti-parallel
Strand 5	A	224	230	anti-parallel
Strand 6	A	333	338	anti-parallel
Strand 7	A	327	330	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	283	first strand
Strand 2	A	289	294	anti-parallel
Strand 3	A	299	304	anti-parallel
Strand 4	A	309	315	anti-parallel
Strand 5	A	323	324	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	350	first strand
Strand 2	A	356	361	anti-parallel
Strand 3	A	367	372	anti-parallel
Strand 4	A	383	388	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	405	first strand
Strand 2	A	411	417	anti-parallel
Strand 3	A	424	430	anti-parallel
Strand 4	A	435	443	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	446	451	first strand
Strand 2	A	457	463	anti-parallel
Strand 3	A	470	476	anti-parallel
Strand 4	A	481	486	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	88	first strand
Strand 2	B	72	77	anti-parallel
Strand 3	B	62	66	anti-parallel
Strand 4	B	496	497	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	104	first strand
Strand 2	B	114	121	anti-parallel
Strand 3	B	144	149	anti-parallel
Strand 4	B	154	159	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	174	first strand
Strand 2	B	180	185	anti-parallel
Strand 3	B	190	195	anti-parallel
Strand 4	B	200	211	anti-parallel
Strand 5	B	224	230	anti-parallel
Strand 6	B	333	338	anti-parallel
Strand 7	B	327	330	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	283	first strand
Strand 2	B	289	294	anti-parallel
Strand 3	B	299	304	anti-parallel
Strand 4	B	309	315	anti-parallel
Strand 5	B	323	324	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	350	first strand
Strand 2	B	356	361	anti-parallel
Strand 3	B	367	372	anti-parallel
Strand 4	B	383	388	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	403	405	first strand
Strand 2	B	411	416	anti-parallel
Strand 3	B	424	430	anti-parallel
Strand 4	B	435	443	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	446	451	first strand
Strand 2	B	457	463	anti-parallel
Strand 3	B	470	476	anti-parallel
Strand 4	B	481	486	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Q9Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Q9Y