Analysis of interatomic Contacts of Structural Units in PDB entry:
8QA4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QA4 entry

There are 2 chains in PDB entry 8QA4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 415ASN 644
B
 GLU 415ASN 644
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 8QA4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
415 421Right-handed alpha
Helix 2
AA2
A
427 440Right-handed alpha
Helix 3
AA3
A
461 466Right-handed 310
Helix 4
AA4
A
467 476Right-handed alpha
Helix 5
AA5
A
518 530Right-handed alpha
Helix 6
AA6
A
551 555Right-handed 310
Helix 7
AA7
A
576 595Right-handed alpha
Helix 8
AA8
A
603 616Right-handed alpha
Helix 9
AA9
A
631 644Right-handed alpha
Helix 10
AB1
B
416 421Right-handed alpha
Helix 11
AB2
B
427 440Right-handed alpha
Helix 12
AB3
B
461 466Right-handed 310
Helix 13
AB4
B
467 476Right-handed alpha
Helix 14
AB5
B
518 530Right-handed alpha
Helix 15
AB6
B
551 555Right-handed 310
Helix 16
AB7
B
576 595Right-handed alpha
Helix 17
AB8
B
603 616Right-handed alpha
Helix 18
AB9
B
631 644Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8QA4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
480 485first strand
Strand 2
A
511 517anti-parallel
Strand 3
A
617 623anti-parallel
Strand 4
A
536 542anti-parallel
Strand 5
A
545 549anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 492first strand
Strand 2
A
506 509anti-parallel
Strand 3
A
557 563anti-parallel
Strand 4
A
570 575anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
480 485first strand
Strand 2
B
511 517anti-parallel
Strand 3
B
617 623anti-parallel
Strand 4
B
536 542anti-parallel
Strand 5
B
545 549anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
488 492first strand
Strand 2
B
506 509anti-parallel
Strand 3
B
557 563anti-parallel
Strand 4
B
570 575anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il