Analysis of interatomic Contacts of Structural Units in PDB entry:
8QA5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QA5 entry

There are 2 chains in PDB entry 8QA5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 40ASN 644
B
 GLU 415ASN 644
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 8QA5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 56Right-handed alpha
Helix 2
AA2
A
69 85Right-handed alpha
Helix 3
AA3
A
96 100Right-handed 310
Helix 4
AA4
A
108 118Right-handed alpha
Helix 5
AA5
A
134 148Right-handed alpha
Helix 6
AA6
A
174 187Right-handed alpha
Helix 7
AA7
A
206 221Right-handed alpha
Helix 8
AA8
A
232 246Right-handed alpha
Helix 9
AA9
A
261 273Right-handed alpha
Helix 10
AB1
A
277 285Right-handed alpha
Helix 11
AB2
A
286 288Right-handed 310
Helix 12
AB3
A
290 313Right-handed alpha
Helix 13
AB4
A
326 336Right-handed alpha
Helix 14
AB5
A
366 369Right-handed 310
Helix 15
AB6
A
370 379Right-handed alpha
Helix 16
AB7
A
417 422Right-handed alpha
Helix 17
AB8
A
427 441Right-handed alpha
Helix 18
AB9
A
461 466Right-handed 310
Helix 19
AC1
A
468 476Right-handed alpha
Helix 20
AC2
A
518 529Right-handed alpha
Helix 21
AC3
A
530 532Right-handed 310
Helix 22
AC4
A
551 555Right-handed 310
Helix 23
AC5
A
578 593Right-handed alpha
Helix 24
AC6
A
603 616Right-handed alpha
Helix 25
AC7
A
635 644Right-handed alpha
Helix 26
AC8
B
417 422Right-handed alpha
Helix 27
AC9
B
427 440Right-handed alpha
Helix 28
AD1
B
461 466Right-handed 310
Helix 29
AD2
B
467 477Right-handed alpha
Helix 30
AD3
B
519 533Right-handed alpha
Helix 31
AD4
B
576 594Right-handed alpha
Helix 32
AD5
B
595 599Right-handed 310
Helix 33
AD6
B
603 614Right-handed alpha
Helix 34
AD7
B
631 644Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 8QA5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 253first strand
Strand 2
A
224 227parallel
Strand 3
A
191 196parallel
Strand 4
A
152 156parallel
Strand 5
A
124 129parallel
Strand 6
A
88 93parallel
Strand 7
A
59 64parallel
Strand 8
A
317 321parallel
Strand 9
A
255 256parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 364first strand
Strand 2
A
570 575parallel
Strand 3
A
557 563anti-parallel
Strand 4
A
506 509anti-parallel
Strand 5
A
491 492anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
480 485first strand
Strand 2
A
511 517anti-parallel
Strand 3
A
617 623anti-parallel
Strand 4
A
536 541anti-parallel
Strand 5
A
547 550anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
479 485first strand
Strand 2
B
511 518anti-parallel
Strand 3
B
616 623anti-parallel
Strand 4
B
536 541anti-parallel
Strand 5
B
547 549anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
491 492first strand
Strand 2
B
506 509anti-parallel
Strand 3
B
557 563anti-parallel
Strand 4
B
570 575anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il