Analysis of interatomic Contacts of Structural Units in PDB entry:
8QA8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QA8 entry

There are 6 chains in PDB entry 8QA8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 52GLU 252
B
 GLY 52LYS 253
C
 GLY 52ASP 251
D
 GLY 52GLU 252
E
 GLY 52ASP 251
F
 GLY 52GLU 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 8QA8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
73 76Right-handed 310
Helix 2
AA2
A
77 92Right-handed alpha
Helix 3
AA3
A
114 124Right-handed alpha
Helix 4
AA4
A
138 148Right-handed alpha
Helix 5
AA5
A
153 166Right-handed alpha
Helix 6
AA6
A
170 178Right-handed alpha
Helix 7
AA7
A
181 190Right-handed alpha
Helix 8
AA8
A
191 194Right-handed 310
Helix 9
AA9
A
195 204Right-handed alpha
Helix 10
AB1
A
209 223Right-handed alpha
Helix 11
AB2
A
223 232Right-handed alpha
Helix 12
AB3
A
239 251Right-handed alpha
Helix 13
AB4
B
73 76Right-handed 310
Helix 14
AB5
B
77 92Right-handed alpha
Helix 15
AB6
B
114 124Right-handed alpha
Helix 16
AB7
B
138 148Right-handed alpha
Helix 17
AB8
B
153 167Right-handed alpha
Helix 18
AB9
B
170 178Right-handed alpha
Helix 19
AC1
B
181 190Right-handed alpha
Helix 20
AC2
B
191 194Right-handed 310
Helix 21
AC3
B
195 204Right-handed alpha
Helix 22
AC4
B
209 223Right-handed alpha
Helix 23
AC5
B
223 232Right-handed alpha
Helix 24
AC6
B
239 251Right-handed alpha
Helix 25
AC7
C
73 76Right-handed 310
Helix 26
AC8
C
77 92Right-handed alpha
Helix 27
AC9
C
114 124Right-handed alpha
Helix 28
AD1
C
138 148Right-handed alpha
Helix 29
AD2
C
153 166Right-handed alpha
Helix 30
AD3
C
170 178Right-handed alpha
Helix 31
AD4
C
181 190Right-handed alpha
Helix 32
AD5
C
191 193Right-handed 310
Helix 33
AD6
C
195 204Right-handed alpha
Helix 34
AD7
C
209 223Right-handed alpha
Helix 35
AD8
C
223 232Right-handed alpha
Helix 36
AD9
C
239 251Right-handed alpha
Helix 37
AE1
D
73 76Right-handed 310
Helix 38
AE2
D
77 92Right-handed alpha
Helix 39
AE3
D
114 124Right-handed alpha
Helix 40
AE4
D
138 148Right-handed alpha
Helix 41
AE5
D
153 166Right-handed alpha
Helix 42
AE6
D
170 178Right-handed alpha
Helix 43
AE7
D
181 190Right-handed alpha
Helix 44
AE8
D
191 194Right-handed 310
Helix 45
AE9
D
195 204Right-handed alpha
Helix 46
AF1
D
209 223Right-handed alpha
Helix 47
AF2
D
223 232Right-handed alpha
Helix 48
AF3
D
239 251Right-handed alpha
Helix 49
AF4
E
73 76Right-handed 310
Helix 50
AF5
E
77 92Right-handed alpha
Helix 51
AF6
E
114 124Right-handed alpha
Helix 52
AF7
E
138 148Right-handed alpha
Helix 53
AF8
E
153 167Right-handed alpha
Helix 54
AF9
E
170 178Right-handed alpha
Helix 55
AG1
E
181 190Right-handed alpha
Helix 56
AG2
E
191 193Right-handed 310
Helix 57
AG3
E
195 204Right-handed alpha
Helix 58
AG4
E
209 223Right-handed alpha
Helix 59
AG5
E
223 232Right-handed alpha
Helix 60
AG6
E
239 251Right-handed alpha
Helix 61
AG7
F
73 76Right-handed 310
Helix 62
AG8
F
77 92Right-handed alpha
Helix 63
AG9
F
114 124Right-handed alpha
Helix 64
AH1
F
138 148Right-handed alpha
Helix 65
AH2
F
153 166Right-handed alpha
Helix 66
AH3
F
170 178Right-handed alpha
Helix 67
AH4
F
181 190Right-handed alpha
Helix 68
AH5
F
191 194Right-handed 310
Helix 69
AH6
F
195 204Right-handed alpha
Helix 70
AH7
F
209 223Right-handed alpha
Helix 71
AH8
F
223 232Right-handed alpha
Helix 72
AH9
F
239 248Right-handed alpha
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There are 6 sheets in PDB entry 8QA8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 57first strand
Strand 2
A
128 133anti-parallel
Strand 3
A
97 101parallel
Strand 4
A
109 113anti-parallel
Strand 5
A
61 62parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 57first strand
Strand 2
B
128 133anti-parallel
Strand 3
B
97 101parallel
Strand 4
B
109 113anti-parallel
Strand 5
B
61 62parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 57first strand
Strand 2
C
128 133anti-parallel
Strand 3
C
97 101parallel
Strand 4
C
109 113anti-parallel
Strand 5
C
61 62parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
54 57first strand
Strand 2
D
128 133anti-parallel
Strand 3
D
97 101parallel
Strand 4
D
109 113anti-parallel
Strand 5
D
61 62parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
54 57first strand
Strand 2
E
128 133anti-parallel
Strand 3
E
97 101parallel
Strand 4
E
109 113anti-parallel
Strand 5
E
61 62parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
54 57first strand
Strand 2
F
128 133anti-parallel
Strand 3
F
97 101parallel
Strand 4
F
109 113anti-parallel
Strand 5
F
61 62parallel
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