Analysis of interatomic Contacts of Structural Units in PDB entry:
8QAT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QAT entry

There are 4 chains in PDB entry 8QAT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 627ARG 705
B
 ALA 627GLY 689
C
 ASP 32LEU 953
D
 THR 66GLU 287
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 8QAT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
627 687Right-handed alpha
Helix 2
AA2
A
693 702Right-handed alpha
Helix 3
AA3
B
628 689Right-handed alpha
Helix 4
AA4
C
33 53Right-handed alpha
Helix 5
AA5
C
63 82Right-handed alpha
Helix 6
AA6
C
94 101Right-handed alpha
Helix 7
AA7
C
104 117Right-handed alpha
Helix 8
AA8
C
118 120Right-handed 310
Helix 9
AA9
C
122 141Right-handed alpha
Helix 10
AB1
C
144 147Right-handed 310
Helix 11
AB2
C
148 162Right-handed alpha
Helix 12
AB3
C
169 190Right-handed alpha
Helix 13
AB4
C
193 198Right-handed alpha
Helix 14
AB5
C
210 215Right-handed alpha
Helix 15
AB6
C
216 220Right-handed 310
Helix 16
AB7
C
223 242Right-handed alpha
Helix 17
AB8
C
244 255Right-handed alpha
Helix 18
AB9
C
256 269Right-handed alpha
Helix 19
AC1
C
287 292Right-handed alpha
Helix 20
AC2
C
294 314Right-handed alpha
Helix 21
AC3
C
315 331Right-handed alpha
Helix 22
AC4
C
334 340Right-handed alpha
Helix 23
AC5
C
343 361Right-handed alpha
Helix 24
AC6
C
363 377Right-handed alpha
Helix 25
AC7
C
384 391Right-handed alpha
Helix 26
AC8
C
396 412Right-handed alpha
Helix 27
AC9
C
414 422Right-handed alpha
Helix 28
AD1
C
422 427Right-handed alpha
Helix 29
AD2
C
436 441Right-handed 310
Helix 30
AD3
C
447 455Right-handed alpha
Helix 31
AD4
C
550 568Right-handed alpha
Helix 32
AD5
C
739 751Right-handed alpha
Helix 33
AD6
C
756 772Right-handed alpha
Helix 34
AD7
C
775 783Right-handed alpha
Helix 35
AD8
C
795 814Right-handed alpha
Helix 36
AD9
C
816 835Right-handed alpha
Helix 37
AE1
C
915 945Right-handed alpha
Helix 38
AE2
D
70 89Right-handed alpha
Helix 39
AE3
D
159 163Right-handed 310
Helix 40
AE4
D
173 184Right-handed alpha
Helix 41
AE5
D
195 203Right-handed alpha
Helix 42
AE6
D
205 223Right-handed alpha
Helix 43
AE7
D
242 255Right-handed alpha
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There are 2 sheets in PDB entry 8QAT. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
378 379first strand
Strand 2
C
382 383anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
94 98first strand
Strand 2
D
105 112anti-parallel
Strand 3
D
120 127anti-parallel
Strand 4
D
139 142anti-parallel
Strand 5
D
157 158anti-parallel
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