Analysis of interatomic Contacts of Structural Units in PDB entry:
8QAU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QAU entry

There are 5 chains in PDB entry 8QAU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 MET 1VAL 440
D
 MET 1ASP 427
A
 ASN 113ASN 365
B
 MET 1GLU 207
E
 ARG 254VAL 305
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 8QAU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
9 28Right-handed alpha
Helix 2
AA2
C
47 51Right-handed 310
Helix 3
AA3
C
72 81Right-handed alpha
Helix 4
AA4
C
102 108Right-handed alpha
Helix 5
AA5
C
110 113Right-handed 310
Helix 6
AA6
C
114 129Right-handed alpha
Helix 7
AA7
C
144 161Right-handed alpha
Helix 8
AA8
C
182 190Right-handed alpha
Helix 9
AA9
C
190 196Right-handed alpha
Helix 10
AB1
C
205 216Right-handed alpha
Helix 11
AB2
C
223 240Right-handed alpha
Helix 12
AB3
C
241 243Right-handed 310
Helix 13
AB4
C
251 260Right-handed alpha
Helix 14
AB5
C
277 284Right-handed alpha
Helix 15
AB6
C
287 296Right-handed alpha
Helix 16
AB7
C
297 301Right-handed 310
Helix 17
AB8
C
306 310Right-handed 310
Helix 18
AB9
C
324 338Right-handed alpha
Helix 19
AC1
C
384 400Right-handed alpha
Helix 20
AC2
C
405 410Right-handed alpha
Helix 21
AC3
C
415 432Right-handed alpha
Helix 22
AC4
D
10 28Right-handed alpha
Helix 23
AC5
D
46 49Right-handed 310
Helix 24
AC6
D
69 78Right-handed alpha
Helix 25
AC7
D
81 85Right-handed 310
Helix 26
AC8
D
86 90Right-handed 310
Helix 27
AC9
D
100 106Right-handed alpha
Helix 28
AD1
D
109 126Right-handed alpha
Helix 29
AD2
D
142 159Right-handed alpha
Helix 30
AD3
D
180 195Right-handed alpha
Helix 31
AD4
D
204 214Right-handed alpha
Helix 32
AD5
D
221 237Right-handed alpha
Helix 33
AD6
D
237 242Right-handed alpha
Helix 34
AD7
D
249 258Right-handed alpha
Helix 35
AD8
D
285 294Right-handed alpha
Helix 36
AD9
D
304 308Right-handed 310
Helix 37
AE1
D
322 337Right-handed alpha
Helix 38
AE2
D
374 390Right-handed alpha
Helix 39
AE3
D
394 402Right-handed alpha
Helix 40
AE4
D
404 427Right-handed alpha
Helix 41
AE5
A
122 139Right-handed alpha
Helix 42
AE6
A
140 145Right-handed alpha
Helix 43
AE7
A
150 156Right-handed alpha
Helix 44
AE8
A
158 172Right-handed alpha
Helix 45
AE9
A
182 194Right-handed alpha
Helix 46
AF1
A
198 202Right-handed 310
Helix 47
AF2
A
203 209Right-handed alpha
Helix 48
AF3
A
214 255Right-handed alpha
Helix 49
AF4
A
260 292Right-handed alpha
Helix 50
AF5
A
297 365Right-handed alpha
Helix 51
AF6
B
12 24Right-handed alpha
Helix 52
AF7
B
29 35Right-handed alpha
Helix 53
AF8
B
37 53Right-handed alpha
Helix 54
AF9
B
56 70Right-handed alpha
Helix 55
AG1
B
77 101Right-handed alpha
Helix 56
AG2
B
107 113Right-handed alpha
Helix 57
AG3
B
115 140Right-handed alpha
Helix 58
AG4
B
140 169Right-handed alpha
Helix 59
AG5
B
181 207Right-handed alpha
Helix 60
AG6
E
257 267Right-handed alpha
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There are 5 sheets in PDB entry 8QAU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 93first strand
Strand 2
C
65 68parallel
Strand 3
C
2 8parallel
Strand 4
C
131 138parallel
Strand 5
C
165 169parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 55first strand
Strand 2
C
61 63anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
269 273first strand
Strand 2
C
373 381anti-parallel
Strand 3
C
312 321anti-parallel
Strand 4
C
351 356parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
91 92first strand
Strand 2
D
63 67parallel
Strand 3
D
3 9parallel
Strand 4
D
130 138parallel
Strand 5
D
163 170parallel
Strand 6
D
198 203parallel
Strand 7
D
265 271parallel
Strand 8
D
364 371anti-parallel
Strand 9
D
310 318anti-parallel
Strand 10
D
349 354parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
51 54first strand
Strand 2
D
58 61anti-parallel
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