Analysis of interatomic Contacts of Structural Units in PDB entry:
8QAW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QAW entry

There are 7 chains in PDB entry 8QAW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 77	ARG 261
B	GLY 77	ARG 261
C	GLY 77	ARG 261
D	GLY 77	ARG 261
E	GLY 77	ARG 260
F	GLY 77	ARG 261
G	GLY 77	ARG 252

There are 32 helices in PDB entry 8QAW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	110	125	Right-handed alpha
Helix 2	AA2	A	140	160	Right-handed alpha
Helix 3	AA3	A	209	223	Right-handed alpha
Helix 4	AA4	A	235	256	Right-handed alpha
Helix 5	AA5	B	110	125	Right-handed alpha
Helix 6	AA6	B	140	160	Right-handed alpha
Helix 7	AA7	B	209	223	Right-handed alpha
Helix 8	AA8	B	235	256	Right-handed alpha
Helix 9	AA9	C	110	125	Right-handed alpha
Helix 10	AB1	C	140	160	Right-handed alpha
Helix 11	AB2	C	209	223	Right-handed alpha
Helix 12	AB3	C	235	256	Right-handed alpha
Helix 13	AB4	D	110	125	Right-handed alpha
Helix 14	AB5	D	140	160	Right-handed alpha
Helix 15	AB6	D	209	223	Right-handed alpha
Helix 16	AB7	D	235	256	Right-handed alpha
Helix 17	AB8	E	110	125	Right-handed alpha
Helix 18	AB9	E	140	160	Right-handed alpha
Helix 19	AC1	E	209	223	Right-handed alpha
Helix 20	AC2	E	235	256	Right-handed alpha
Helix 21	AC3	F	110	125	Right-handed alpha
Helix 22	AC4	F	140	160	Right-handed alpha
Helix 23	AC5	F	209	223	Right-handed alpha
Helix 24	AC6	F	235	256	Right-handed alpha
Helix 25	AC7	G	110	125	Right-handed alpha
Helix 26	AC8	G	140	160	Right-handed alpha
Helix 27	AC9	G	209	223	Right-handed alpha
Helix 28	AD1	G	235	256	Right-handed alpha
Helix 29	AD2	H	110	125	Right-handed alpha
Helix 30	AD3	H	140	160	Right-handed alpha
Helix 31	AD4	H	209	223	Right-handed alpha
Helix 32	AD5	H	235	256	Right-handed alpha

There are 24 sheets in PDB entry 8QAW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	86	first strand
Strand 2	A	90	97	anti-parallel
Strand 3	A	127	134	anti-parallel
Strand 4	A	104	107	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	175	first strand
Strand 2	A	178	185	anti-parallel
Strand 3	A	225	232	anti-parallel
Strand 4	A	191	195	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	203	first strand
Strand 2	A	206	207	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	86	first strand
Strand 2	B	90	97	anti-parallel
Strand 3	B	127	134	anti-parallel
Strand 4	B	104	107	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	175	first strand
Strand 2	B	178	185	anti-parallel
Strand 3	B	225	232	anti-parallel
Strand 4	B	191	195	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	203	first strand
Strand 2	B	206	207	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	86	first strand
Strand 2	C	90	97	anti-parallel
Strand 3	C	127	134	anti-parallel
Strand 4	C	104	107	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	175	first strand
Strand 2	C	178	185	anti-parallel
Strand 3	C	225	232	anti-parallel
Strand 4	C	191	195	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	202	203	first strand
Strand 2	C	206	207	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	86	first strand
Strand 2	D	90	97	anti-parallel
Strand 3	D	127	134	anti-parallel
Strand 4	D	104	107	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	168	175	first strand
Strand 2	D	178	185	anti-parallel
Strand 3	D	225	232	anti-parallel
Strand 4	D	191	195	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	202	203	first strand
Strand 2	D	206	207	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	80	86	first strand
Strand 2	E	90	97	anti-parallel
Strand 3	E	127	134	anti-parallel
Strand 4	E	104	107	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	168	175	first strand
Strand 2	E	178	185	anti-parallel
Strand 3	E	225	232	anti-parallel
Strand 4	E	191	195	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	202	203	first strand
Strand 2	E	206	207	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	80	86	first strand
Strand 2	F	90	97	anti-parallel
Strand 3	F	127	134	anti-parallel
Strand 4	F	104	107	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	168	175	first strand
Strand 2	F	178	185	anti-parallel
Strand 3	F	225	232	anti-parallel
Strand 4	F	191	195	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	202	203	first strand
Strand 2	F	206	207	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	80	86	first strand
Strand 2	G	90	97	anti-parallel
Strand 3	G	127	134	anti-parallel
Strand 4	G	104	107	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	168	175	first strand
Strand 2	G	178	185	anti-parallel
Strand 3	G	225	232	anti-parallel
Strand 4	G	191	195	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	202	203	first strand
Strand 2	G	206	207	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	80	86	first strand
Strand 2	H	90	97	anti-parallel
Strand 3	H	127	134	anti-parallel
Strand 4	H	104	107	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	168	175	first strand
Strand 2	H	178	185	anti-parallel
Strand 3	H	225	232	anti-parallel
Strand 4	H	191	195	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	202	203	first strand
Strand 2	H	206	207	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QAW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QAW