Analysis of interatomic Contacts of Structural Units in PDB entry:
8QB1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QB1 entry

There are 6 chains in PDB entry 8QB1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -2	LYS 791
B	GLY -2	LYS 791
C	GLY -2	LYS 790
D	GLY -2	LYS 791
E	GLY -2	LYS 791
F	GLY -2	LYS 790

There are no helices in PDB entry 8QB1

There are 18 sheets in PDB entry 8QB1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	-1	709	first strand
Strand 2	A	716	724	anti-parallel
Strand 3	A	731	732	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	-1	709	first strand
Strand 2	A	716	724	anti-parallel
Strand 3	A	760	764	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	749	756	first strand
Strand 2	A	740	746	anti-parallel
Strand 3	A	771	779	anti-parallel
Strand 4	A	782	790	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	-1	709	first strand
Strand 2	B	716	724	anti-parallel
Strand 3	B	731	733	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	-1	709	first strand
Strand 2	B	716	724	anti-parallel
Strand 3	B	760	764	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	749	756	first strand
Strand 2	B	740	746	anti-parallel
Strand 3	B	771	779	anti-parallel
Strand 4	B	782	790	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	-1	709	first strand
Strand 2	C	716	724	anti-parallel
Strand 3	C	731	732	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	-1	709	first strand
Strand 2	C	716	724	anti-parallel
Strand 3	C	760	764	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	749	756	first strand
Strand 2	C	740	746	anti-parallel
Strand 3	C	771	779	anti-parallel
Strand 4	C	782	790	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	-1	709	first strand
Strand 2	D	716	724	anti-parallel
Strand 3	D	731	732	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	-1	709	first strand
Strand 2	D	716	724	anti-parallel
Strand 3	D	760	764	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	749	756	first strand
Strand 2	D	740	746	anti-parallel
Strand 3	D	771	779	anti-parallel
Strand 4	D	782	790	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	-1	709	first strand
Strand 2	E	716	724	anti-parallel
Strand 3	E	731	733	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	-1	709	first strand
Strand 2	E	716	724	anti-parallel
Strand 3	E	760	764	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	749	756	first strand
Strand 2	E	740	746	anti-parallel
Strand 3	E	771	779	anti-parallel
Strand 4	E	782	790	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	-1	709	first strand
Strand 2	F	716	724	anti-parallel
Strand 3	F	731	732	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	-1	709	first strand
Strand 2	F	716	724	anti-parallel
Strand 3	F	760	764	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	749	756	first strand
Strand 2	F	740	746	anti-parallel
Strand 3	F	771	779	anti-parallel
Strand 4	F	782	790	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QB1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QB1