Analysis of interatomic Contacts of Structural Units in PDB entry:
8QBB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QBB entry

There are 14 chains in PDB entry 8QBB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 271
J
 MET 1THR 271
F
 MET 1THR 271
B
 MET 1THR 271
C
 MET 1THR 271
I
 MET 1THR 271
D
 MET 1THR 271
E
 MET 1THR 271
K
 MET 1THR 271
L
 MET 1THR 271
G
 MET 1THR 271
M
 MET 1THR 271
H
 MET 1THR 271
N
 MET 1THR 271
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are140 helices in PDB entry 8QBB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 6Right-handed 310
Helix 2
AA2
A
14 20Right-handed alpha
Helix 3
AA3
A
38 47Right-handed alpha
Helix 4
AA4
A
52 90Right-handed alpha
Helix 5
AA5
A
94 110Right-handed alpha
Helix 6
AA6
A
110 160Right-handed alpha
Helix 7
AA7
A
164 225Right-handed alpha
Helix 8
AA8
A
226 228Right-handed 310
Helix 9
AA9
A
243 261Right-handed alpha
Helix 10
AB1
A
262 266Right-handed 310
Helix 11
AB2
J
1 6Right-handed 310
Helix 12
AB3
J
14 20Right-handed alpha
Helix 13
AB4
J
38 47Right-handed alpha
Helix 14
AB5
J
52 90Right-handed alpha
Helix 15
AB6
J
94 110Right-handed alpha
Helix 16
AB7
J
110 160Right-handed alpha
Helix 17
AB8
J
164 225Right-handed alpha
Helix 18
AB9
J
226 228Right-handed 310
Helix 19
AC1
J
243 261Right-handed alpha
Helix 20
AC2
J
262 266Right-handed 310
Helix 21
AC3
F
1 6Right-handed 310
Helix 22
AC4
F
14 20Right-handed alpha
Helix 23
AC5
F
38 47Right-handed alpha
Helix 24
AC6
F
52 90Right-handed alpha
Helix 25
AC7
F
94 110Right-handed alpha
Helix 26
AC8
F
110 160Right-handed alpha
Helix 27
AC9
F
164 225Right-handed alpha
Helix 28
AD1
F
226 228Right-handed 310
Helix 29
AD2
F
243 261Right-handed alpha
Helix 30
AD3
F
262 266Right-handed 310
Helix 31
AD4
B
1 6Right-handed 310
Helix 32
AD5
B
14 20Right-handed alpha
Helix 33
AD6
B
38 47Right-handed alpha
Helix 34
AD7
B
52 90Right-handed alpha
Helix 35
AD8
B
94 110Right-handed alpha
Helix 36
AD9
B
110 160Right-handed alpha
Helix 37
AE1
B
164 225Right-handed alpha
Helix 38
AE2
B
226 228Right-handed 310
Helix 39
AE3
B
243 261Right-handed alpha
Helix 40
AE4
B
262 266Right-handed 310
Helix 41
AE5
C
1 6Right-handed 310
Helix 42
AE6
C
14 20Right-handed alpha
Helix 43
AE7
C
38 47Right-handed alpha
Helix 44
AE8
C
52 90Right-handed alpha
Helix 45
AE9
C
94 110Right-handed alpha
Helix 46
AF1
C
110 160Right-handed alpha
Helix 47
AF2
C
164 225Right-handed alpha
Helix 48
AF3
C
226 228Right-handed 310
Helix 49
AF4
C
243 261Right-handed alpha
Helix 50
AF5
C
262 266Right-handed 310
Helix 51
AF6
I
1 6Right-handed 310
Helix 52
AF7
I
14 20Right-handed alpha
Helix 53
AF8
I
38 47Right-handed alpha
Helix 54
AF9
I
52 90Right-handed alpha
Helix 55
AG1
I
94 110Right-handed alpha
Helix 56
AG2
I
110 160Right-handed alpha
Helix 57
AG3
I
164 225Right-handed alpha
Helix 58
AG4
I
226 228Right-handed 310
Helix 59
AG5
I
243 261Right-handed alpha
Helix 60
AG6
I
262 266Right-handed 310
Helix 61
AG7
D
1 6Right-handed 310
Helix 62
AG8
D
14 20Right-handed alpha
Helix 63
AG9
D
38 47Right-handed alpha
Helix 64
AH1
D
52 90Right-handed alpha
Helix 65
AH2
D
94 110Right-handed alpha
Helix 66
AH3
D
110 160Right-handed alpha
Helix 67
AH4
D
164 225Right-handed alpha
Helix 68
AH5
D
226 228Right-handed 310
Helix 69
AH6
D
243 261Right-handed alpha
Helix 70
AH7
D
262 266Right-handed 310
Helix 71
AH8
E
1 6Right-handed 310
Helix 72
AH9
E
14 20Right-handed alpha
Helix 73
AI1
E
38 47Right-handed alpha
Helix 74
AI2
E
52 90Right-handed alpha
Helix 75
AI3
E
94 110Right-handed alpha
Helix 76
AI4
E
110 160Right-handed alpha
Helix 77
AI5
E
164 225Right-handed alpha
Helix 78
AI6
E
226 228Right-handed 310
Helix 79
AI7
E
243 261Right-handed alpha
Helix 80
AI8
E
262 266Right-handed 310
Helix 81
AI9
K
1 6Right-handed 310
Helix 82
AJ1
K
14 20Right-handed alpha
Helix 83
AJ2
K
38 47Right-handed alpha
Helix 84
AJ3
K
52 90Right-handed alpha
Helix 85
AJ4
K
94 110Right-handed alpha
Helix 86
AJ5
K
110 160Right-handed alpha
Helix 87
AJ6
K
164 225Right-handed alpha
Helix 88
AJ7
K
226 228Right-handed 310
Helix 89
AJ8
K
243 261Right-handed alpha
Helix 90
AJ9
K
262 266Right-handed 310
Helix 91
AK1
L
1 6Right-handed 310
Helix 92
AK2
L
14 20Right-handed alpha
Helix 93
AK3
L
38 47Right-handed alpha
Helix 94
AK4
L
52 90Right-handed alpha
Helix 95
AK5
L
94 110Right-handed alpha
Helix 96
AK6
L
110 160Right-handed alpha
Helix 97
AK7
L
164 225Right-handed alpha
Helix 98
AK8
L
226 228Right-handed 310
Helix 99
AK9
L
243 261Right-handed alpha
Helix 100
AL1
L
262 266Right-handed 310
Helix 101
AL2
G
1 6Right-handed 310
Helix 102
AL3
G
14 20Right-handed alpha
Helix 103
AL4
G
38 47Right-handed alpha
Helix 104
AL5
G
52 90Right-handed alpha
Helix 105
AL6
G
94 110Right-handed alpha
Helix 106
AL7
G
110 160Right-handed alpha
Helix 107
AL8
G
164 225Right-handed alpha
Helix 108
AL9
G
226 228Right-handed 310
Helix 109
AM1
G
243 261Right-handed alpha
Helix 110
AM2
G
262 266Right-handed 310
Helix 111
AM3
M
1 6Right-handed 310
Helix 112
AM4
M
14 20Right-handed alpha
Helix 113
AM5
M
38 47Right-handed alpha
Helix 114
AM6
M
52 90Right-handed alpha
Helix 115
AM7
M
94 110Right-handed alpha
Helix 116
AM8
M
110 160Right-handed alpha
Helix 117
AM9
M
164 225Right-handed alpha
Helix 118
AN1
M
226 228Right-handed 310
Helix 119
AN2
M
243 261Right-handed alpha
Helix 120
AN3
M
262 266Right-handed 310
Helix 121
AN4
H
1 6Right-handed 310
Helix 122
AN5
H
14 20Right-handed alpha
Helix 123
AN6
H
38 47Right-handed alpha
Helix 124
AN7
H
52 90Right-handed alpha
Helix 125
AN8
H
94 110Right-handed alpha
Helix 126
AN9
H
110 160Right-handed alpha
Helix 127
AO1
H
164 225Right-handed alpha
Helix 128
AO2
H
226 228Right-handed 310
Helix 129
AO3
H
243 261Right-handed alpha
Helix 130
AO4
H
262 266Right-handed 310
Helix 131
AO5
N
1 6Right-handed 310
Helix 132
AO6
N
14 20Right-handed alpha
Helix 133
AO7
N
38 47Right-handed alpha
Helix 134
AO8
N
52 90Right-handed alpha
Helix 135
AO9
N
94 110Right-handed alpha
Helix 136
AP1
N
110 160Right-handed alpha
Helix 137
AP2
N
164 225Right-handed alpha
Helix 138
AP3
N
226 228Right-handed 310
Helix 139
AP4
N
243 261Right-handed alpha
Helix 140
AP5
N
262 266Right-handed 310
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There are no sheets in PDB entry 8QBB
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