Analysis of interatomic Contacts of Structural Units in PDB entry:
8QBH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QBH entry

There is 1 chain in PDB entry 8QBH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 5TYR 381
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8QBH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 18Right-handed alpha
Helix 2
AA2
A
21 27Right-handed alpha
Helix 3
AA3
A
37 46Right-handed alpha
Helix 4
AA4
A
57 81Right-handed alpha
Helix 5
AA5
A
84 104Right-handed alpha
Helix 6
AA6
A
109 128Right-handed alpha
Helix 7
AA7
A
129 131Right-handed 310
Helix 8
AA8
A
180 191Right-handed alpha
Helix 9
AA9
A
204 208Right-handed 310
Helix 10
AB1
A
217 231Right-handed alpha
Helix 11
AB2
A
245 258Right-handed alpha
Helix 12
AB3
A
259 262Right-handed 310
Helix 13
AB4
A
276 280Right-handed 310
Helix 14
AB5
A
281 293Right-handed alpha
Helix 15
AB6
A
295 297Right-handed 310
Helix 16
AB7
A
298 307Right-handed alpha
Helix 17
AB8
A
330 342Right-handed alpha
Helix 18
AB9
A
354 359Right-handed 310
Helix 19
AC1
A
360 379Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8QBH.

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 142first strand
Strand 2
A
145 152anti-parallel
Strand 3
A
195 199anti-parallel
Strand 4
A
165 171parallel
Strand 5
A
234 244parallel
Strand 6
A
264 268parallel
Strand 7
A
317 323parallel
Strand 8
A
345 350parallel
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