Analysis of interatomic Contacts of Structural Units in PDB entry:
8QBJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QBJ entry

There are 4 chains in PDB entry 8QBJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU -1PHE 56
A
 MET 58LEU 215
C
 MET 1PHE 56
C
 MET 58LEU 215
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 8QBJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 53Right-handed 310
Helix 2
AA2
A
58 62Right-handed 310
Helix 3
AA3
A
70 75Right-handed alpha
Helix 4
AA4
A
122 127Right-handed alpha
Helix 5
AA5
C
48 53Right-handed 310
Helix 6
AA6
C
58 62Right-handed 310
Helix 7
AA7
C
70 75Right-handed alpha
Helix 8
AA8
C
122 127Right-handed alpha
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There are 2 sheets in PDB entry 8QBJ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 14first strand
Strand 2
A
17 28anti-parallel
Strand 3
A
33 40anti-parallel
Strand 4
A
204 214anti-parallel
Strand 5
A
186 195anti-parallel
Strand 6
A
135 142anti-parallel
Strand 7
A
145 155anti-parallel
Strand 8
A
163 174anti-parallel
Strand 9
A
80 88anti-parallel
Strand 10
A
93 103anti-parallel
Strand 11
A
106 116anti-parallel
Strand 12
A
4 14parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 14first strand
Strand 2
C
17 28anti-parallel
Strand 3
C
33 40anti-parallel
Strand 4
C
204 214anti-parallel
Strand 5
C
186 195anti-parallel
Strand 6
C
135 142anti-parallel
Strand 7
C
145 155anti-parallel
Strand 8
C
163 174anti-parallel
Strand 9
C
80 88anti-parallel
Strand 10
C
93 103anti-parallel
Strand 11
C
106 116anti-parallel
Strand 12
C
4 14parallel
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