Analysis of interatomic Contacts of Structural Units in PDB entry:
8QC1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QC1 entry

There are 2 chains in PDB entry 8QC1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
M
 MET 1ALA 503
L
 MET 1VAL 659
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 8QC1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
M
3 23Right-handed alpha
Helix 2
AA2
M
27 56Right-handed alpha
Helix 3
AA3
M
85 103Right-handed alpha
Helix 4
AA4
M
104 106Right-handed 310
Helix 5
AA5
M
109 130Right-handed alpha
Helix 6
AA6
M
132 143Right-handed alpha
Helix 7
AA7
M
143 155Right-handed alpha
Helix 8
AA8
M
158 189Right-handed alpha
Helix 9
AA9
M
192 197Right-handed alpha
Helix 10
AB1
M
215 233Right-handed alpha
Helix 11
AB2
M
241 249Right-handed alpha
Helix 12
AB3
M
250 260Right-handed alpha
Helix 13
AB4
M
262 272Right-handed alpha
Helix 14
AB5
M
272 277Right-handed alpha
Helix 15
AB6
M
277 305Right-handed alpha
Helix 16
AB7
M
308 331Right-handed alpha
Helix 17
AB8
M
332 365Right-handed alpha
Helix 18
AB9
M
368 372Right-handed 310
Helix 19
AC1
M
374 378Right-handed 310
Helix 20
AC2
M
379 394Right-handed alpha
Helix 21
AC3
M
399 416Right-handed alpha
Helix 22
AC4
M
416 425Right-handed alpha
Helix 23
AC5
M
425 443Right-handed alpha
Helix 24
AC6
M
448 452Right-handed 310
Helix 25
AC7
M
458 478Right-handed alpha
Helix 26
AC8
M
479 500Right-handed alpha
Helix 27
AC9
L
2 24Right-handed alpha
Helix 28
AD1
L
24 50Right-handed alpha
Helix 29
AD2
L
77 102Right-handed alpha
Helix 30
AD3
L
114 134Right-handed alpha
Helix 31
AD4
L
137 157Right-handed alpha
Helix 32
AD5
L
162 195Right-handed alpha
Helix 33
AD6
L
198 210Right-handed alpha
Helix 34
AD7
L
223 239Right-handed alpha
Helix 35
AD8
L
246 251Right-handed alpha
Helix 36
AD9
L
252 254Right-handed 310
Helix 37
AE1
L
255 265Right-handed alpha
Helix 38
AE2
L
266 278Right-handed alpha
Helix 39
AE3
L
278 283Right-handed alpha
Helix 40
AE4
L
285 307Right-handed alpha
Helix 41
AE5
L
312 334Right-handed alpha
Helix 42
AE6
L
336 365Right-handed alpha
Helix 43
AE7
L
370 374Right-handed 310
Helix 44
AE8
L
381 397Right-handed alpha
Helix 45
AE9
L
407 424Right-handed alpha
Helix 46
AF1
L
424 451Right-handed alpha
Helix 47
AF2
L
457 464Right-handed alpha
Helix 48
AF3
L
468 494Right-handed alpha
Helix 49
AF4
L
496 504Right-handed alpha
Helix 50
AF5
L
566 573Right-handed alpha
Helix 51
AF6
L
575 598Right-handed alpha
Helix 52
AF7
L
602 611Right-handed alpha
Helix 53
AF8
L
611 620Right-handed alpha
Helix 54
AF9
L
623 632Right-handed alpha
Helix 55
AG1
L
632 647Right-handed alpha
Helix 56
AG2
L
651 659Right-handed alpha
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There are 3 sheets in PDB entry 8QC1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
64 70first strand
Strand 2
M
76 81anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
55 65first strand
Strand 2
L
68 76anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
213 216first strand
Strand 2
L
219 222anti-parallel
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