Analysis of interatomic Contacts of Structural Units in PDB entry:
8QC3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QC3 entry

There are 2 chains in PDB entry 8QC3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 9LEU 372
B
 VAL 9LEU 372
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 8QC3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 31Right-handed alpha
Helix 2
AA2
A
45 57Right-handed alpha
Helix 3
AA3
A
65 71Right-handed alpha
Helix 4
AA4
A
83 85Right-handed 310
Helix 5
AA5
A
86 97Right-handed alpha
Helix 6
AA6
A
112 125Right-handed alpha
Helix 7
AA7
A
135 138Right-handed 310
Helix 8
AA8
A
139 152Right-handed alpha
Helix 9
AA9
A
172 176Right-handed 310
Helix 10
AB1
A
179 184Right-handed alpha
Helix 11
AB2
A
185 190Right-handed alpha
Helix 12
AB3
A
191 203Right-handed alpha
Helix 13
AB4
A
280 284Right-handed 310
Helix 14
AB5
A
312 318Right-handed alpha
Helix 15
AB6
A
323 337Right-handed alpha
Helix 16
AB7
A
345 366Right-handed alpha
Helix 17
AB8
B
20 31Right-handed alpha
Helix 18
AB9
B
45 57Right-handed alpha
Helix 19
AC1
B
65 71Right-handed alpha
Helix 20
AC2
B
83 85Right-handed 310
Helix 21
AC3
B
86 97Right-handed alpha
Helix 22
AC4
B
112 125Right-handed alpha
Helix 23
AC5
B
135 138Right-handed 310
Helix 24
AC6
B
139 152Right-handed alpha
Helix 25
AC7
B
172 176Right-handed 310
Helix 26
AC8
B
179 184Right-handed alpha
Helix 27
AC9
B
185 190Right-handed alpha
Helix 28
AD1
B
191 203Right-handed alpha
Helix 29
AD2
B
280 284Right-handed 310
Helix 30
AD3
B
312 318Right-handed alpha
Helix 31
AD4
B
323 337Right-handed alpha
Helix 32
AD5
B
345 366Right-handed alpha
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There are 5 sheets in PDB entry 8QC3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
36 42parallel
Strand 3
A
12 17parallel
Strand 4
A
77 80parallel
Strand 5
A
103 106parallel
Strand 6
A
130 133parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 309first strand
Strand 2
A
292 298anti-parallel
Strand 3
A
271 278anti-parallel
Strand 4
A
260 268anti-parallel
Strand 5
A
157 165anti-parallel
Strand 6
A
246 252parallel
Strand 7
A
234 241anti-parallel
Strand 8
A
206 214anti-parallel
Strand 9
A
369 370anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
36 42parallel
Strand 3
B
12 17parallel
Strand 4
B
77 80parallel
Strand 5
B
103 106parallel
Strand 6
B
130 133parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
305 309first strand
Strand 2
B
292 298anti-parallel
Strand 3
B
271 278anti-parallel
Strand 4
B
260 268anti-parallel
Strand 5
B
157 165anti-parallel
Strand 6
B
246 252parallel
Strand 7
B
234 241anti-parallel
Strand 8
B
206 214anti-parallel
Strand 9
B
369 370anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 224first strand
Strand 2
B
227 228anti-parallel
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