Analysis of interatomic Contacts of Structural Units in PDB entry:
8QC8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QC8 entry

There are 4 chains in PDB entry 8QC8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 7	ALA 373
C	ALA 9	HIS 372
D	THR 11	HIS 372
A	ALA 9	HIS 372

There are 59 helices in PDB entry 8QC8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	20	31	Right-handed alpha
Helix 2	AA2	B	45	57	Right-handed alpha
Helix 3	AA3	B	65	72	Right-handed alpha
Helix 4	AA4	B	83	85	Right-handed 310
Helix 5	AA5	B	86	96	Right-handed alpha
Helix 6	AA6	B	112	126	Right-handed alpha
Helix 7	AA7	B	135	138	Right-handed 310
Helix 8	AA8	B	139	151	Right-handed alpha
Helix 9	AA9	B	172	178	Right-handed 310
Helix 10	AB1	B	179	184	Right-handed alpha
Helix 11	AB2	B	185	190	Right-handed alpha
Helix 12	AB3	B	191	203	Right-handed alpha
Helix 13	AB4	B	312	318	Right-handed alpha
Helix 14	AB5	B	323	338	Right-handed alpha
Helix 15	AB6	B	345	366	Right-handed alpha
Helix 16	AB7	C	20	31	Right-handed alpha
Helix 17	AB8	C	45	57	Right-handed alpha
Helix 18	AB9	C	65	72	Right-handed alpha
Helix 19	AC1	C	83	85	Right-handed 310
Helix 20	AC2	C	86	96	Right-handed alpha
Helix 21	AC3	C	112	126	Right-handed alpha
Helix 22	AC4	C	135	138	Right-handed 310
Helix 23	AC5	C	139	151	Right-handed alpha
Helix 24	AC6	C	172	178	Right-handed 310
Helix 25	AC7	C	179	184	Right-handed alpha
Helix 26	AC8	C	185	190	Right-handed alpha
Helix 27	AC9	C	191	203	Right-handed alpha
Helix 28	AD1	C	312	318	Right-handed alpha
Helix 29	AD2	C	323	338	Right-handed alpha
Helix 30	AD3	C	345	366	Right-handed alpha
Helix 31	AD4	D	20	31	Right-handed alpha
Helix 32	AD5	D	45	57	Right-handed alpha
Helix 33	AD6	D	65	72	Right-handed alpha
Helix 34	AD7	D	83	85	Right-handed 310
Helix 35	AD8	D	86	96	Right-handed alpha
Helix 36	AD9	D	112	126	Right-handed alpha
Helix 37	AE1	D	135	138	Right-handed 310
Helix 38	AE2	D	139	151	Right-handed alpha
Helix 39	AE3	D	172	178	Right-handed 310
Helix 40	AE4	D	179	184	Right-handed alpha
Helix 41	AE5	D	185	190	Right-handed alpha
Helix 42	AE6	D	191	203	Right-handed alpha
Helix 43	AE7	D	325	338	Right-handed alpha
Helix 44	AE8	D	345	366	Right-handed alpha
Helix 45	AE9	A	20	31	Right-handed alpha
Helix 46	AF1	A	45	57	Right-handed alpha
Helix 47	AF2	A	65	72	Right-handed alpha
Helix 48	AF3	A	83	85	Right-handed 310
Helix 49	AF4	A	86	97	Right-handed alpha
Helix 50	AF5	A	112	126	Right-handed alpha
Helix 51	AF6	A	135	138	Right-handed 310
Helix 52	AF7	A	139	151	Right-handed alpha
Helix 53	AF8	A	172	178	Right-handed 310
Helix 54	AF9	A	179	184	Right-handed alpha
Helix 55	AG1	A	185	190	Right-handed alpha
Helix 56	AG2	A	191	203	Right-handed alpha
Helix 57	AG3	A	312	318	Right-handed alpha
Helix 58	AG4	A	323	338	Right-handed alpha
Helix 59	AG5	A	345	366	Right-handed alpha

There are 9 sheets in PDB entry 8QC8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	63	first strand
Strand 2	B	36	42	parallel
Strand 3	B	12	17	parallel
Strand 4	B	77	80	parallel
Strand 5	B	103	106	parallel
Strand 6	B	130	133	parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	305	309	first strand
Strand 2	B	292	298	anti-parallel
Strand 3	B	271	278	anti-parallel
Strand 4	B	260	268	anti-parallel
Strand 5	B	157	165	anti-parallel
Strand 6	B	246	252	parallel
Strand 7	B	234	241	anti-parallel
Strand 8	B	206	214	anti-parallel
Strand 9	B	369	370	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	63	first strand
Strand 2	C	36	42	parallel
Strand 3	C	12	17	parallel
Strand 4	C	77	80	parallel
Strand 5	C	103	106	parallel
Strand 6	C	130	133	parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	305	309	first strand
Strand 2	C	292	298	anti-parallel
Strand 3	C	271	278	anti-parallel
Strand 4	C	260	268	anti-parallel
Strand 5	C	157	165	anti-parallel
Strand 6	C	246	252	parallel
Strand 7	C	234	241	anti-parallel
Strand 8	C	206	214	anti-parallel
Strand 9	C	369	370	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	224	first strand
Strand 2	C	227	228	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	63	first strand
Strand 2	D	36	42	parallel
Strand 3	D	12	17	parallel
Strand 4	D	77	80	parallel
Strand 5	D	103	106	parallel
Strand 6	D	130	133	parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	305	308	first strand
Strand 2	D	293	298	anti-parallel
Strand 3	D	271	278	anti-parallel
Strand 4	D	260	268	anti-parallel
Strand 5	D	157	165	anti-parallel
Strand 6	D	246	252	parallel
Strand 7	D	234	241	anti-parallel
Strand 8	D	206	214	anti-parallel
Strand 9	D	369	370	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	63	first strand
Strand 2	A	36	42	parallel
Strand 3	A	12	17	parallel
Strand 4	A	77	80	parallel
Strand 5	A	103	106	parallel
Strand 6	A	130	133	parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	309	first strand
Strand 2	A	292	298	anti-parallel
Strand 3	A	271	278	anti-parallel
Strand 4	A	260	268	anti-parallel
Strand 5	A	157	165	anti-parallel
Strand 6	A	246	252	parallel
Strand 7	A	234	241	anti-parallel
Strand 8	A	206	214	anti-parallel
Strand 9	A	369	370	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QC8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QC8