Analysis of interatomic Contacts of Structural Units in PDB entry:
8QCF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QCF entry

There are 13 chains in PDB entry 8QCF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
ALA 2THR 298
C
ARG 3ALA 243
D
PRO 14ASN 393
E
SER 2VAL 222
F
SER 2ASN 264
G
ASP 5GLU 249
H
SER 2LEU 235
I
SER 52MET 354
J
GLN 6PHE 292
K
ARG 9LYS 1001
L
LEU 119ASN 225
M
GLU 301LEU 1040
N
U 0 U 33
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are132 helices in PDB entry 8QCF. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
B
8 21Right-handed alpha
Helix 2
AA2
B
84 88Right-handed 310
Helix 3
AA3
B
98 113Right-handed alpha
Helix 4
AA4
B
119 122Right-handed 310
Helix 5
AA5
B
146 162Right-handed alpha
Helix 6
AA6
B
178 183Right-handed alpha
Helix 7
AA7
B
205 212Right-handed alpha
Helix 8
AA8
B
224 229Right-handed alpha
Helix 9
AA9
B
258 297Right-handed alpha
Helix 10
AB1
C
94 110Right-handed alpha
Helix 11
AB2
C
113 117Right-handed 310
Helix 12
AB3
C
134 150Right-handed alpha
Helix 13
AB4
C
175 180Right-handed alpha
Helix 14
AB5
C
209 243Right-handed alpha
Helix 15
AB6
D
18 26Right-handed alpha
Helix 16
AB7
D
26 37Right-handed alpha
Helix 17
AB8
D
123 127Right-handed 310
Helix 18
AB9
D
145 162Right-handed alpha
Helix 19
AC1
D
166 171Right-handed 310
Helix 20
AC2
D
226 239Right-handed alpha
Helix 21
AC3
D
287 291Right-handed 310
Helix 22
AC4
D
303 307Right-handed 310
Helix 23
AC5
D
335 343Right-handed alpha
Helix 24
AC6
D
370 390Right-handed alpha
Helix 25
AC7
E
60 75Right-handed alpha
Helix 26
AC8
E
76 78Right-handed 310
Helix 27
AC9
E
79 83Right-handed 310
Helix 28
AD1
E
105 124Right-handed alpha
Helix 29
AD2
E
150 155Right-handed alpha
Helix 30
AD3
E
187 218Right-handed alpha
Helix 31
AD4
E
219 221Right-handed 310
Helix 32
AD5
F
4 16Right-handed alpha
Helix 33
AD6
F
89 103Right-handed alpha
Helix 34
AD7
F
110 113Right-handed 310
Helix 35
AD8
F
137 150Right-handed alpha
Helix 36
AD9
F
202 207Right-handed alpha
Helix 37
AE1
F
241 262Right-handed alpha
Helix 38
AE2
G
106 122Right-handed alpha
Helix 39
AE3
G
126 130Right-handed 310
Helix 40
AE4
G
165 167Right-handed 310
Helix 41
AE5
G
168 184Right-handed alpha
Helix 42
AE6
G
223 248Right-handed alpha
Helix 43
AE7
H
159 169Right-handed alpha
Helix 44
AE8
H
173 180Right-handed alpha
Helix 45
AE9
H
200 217Right-handed alpha
Helix 46
AF1
H
219 221Right-handed 310
Helix 47
AF2
H
222 234Right-handed alpha
Helix 48
AF3
I
139 141Right-handed 310
Helix 49
AF4
I
158 162Right-handed 310
Helix 50
AF5
I
203 207Right-handed 310
Helix 51
AF6
I
237 244Right-handed alpha
Helix 52
AF7
I
277 282Right-handed 310
Helix 53
AF8
I
290 310Right-handed alpha
Helix 54
AF9
I
315 326Right-handed alpha
Helix 55
AG1
I
327 329Right-handed 310
Helix 56
AG2
I
331 336Right-handed 310
Helix 57
AG3
I
337 354Right-handed alpha
Helix 58
AG4
J
183 188Right-handed 310
Helix 59
AG5
J
189 193Right-handed 310
Helix 60
AG6
J
208 210Right-handed 310
Helix 61
AG7
J
219 223Right-handed 310
Helix 62
AG8
K
54 58Right-handed 310
Helix 63
AG9
K
91 98Right-handed alpha
Helix 64
AH1
K
115 125Right-handed alpha
Helix 65
AH2
K
125 138Right-handed alpha
Helix 66
AH3
K
165 185Right-handed alpha
Helix 67
AH4
K
186 189Right-handed 310
Helix 68
AH5
K
217 224Right-handed alpha
Helix 69
AH6
K
227 232Right-handed alpha
Helix 70
AH7
K
233 235Right-handed 310
Helix 71
AH8
K
260 270Right-handed alpha
Helix 72
AH9
K
322 326Right-handed 310
Helix 73
AI1
K
366 382Right-handed alpha
Helix 74
AI2
K
483 488Right-handed alpha
Helix 75
AI3
K
496 502Right-handed alpha
Helix 76
AI4
K
506 510Right-handed 310
Helix 77
AI5
K
518 525Right-handed alpha
Helix 78
AI6
K
573 576Right-handed 310
Helix 79
AI7
K
581 590Right-handed alpha
Helix 80
AI8
K
605 610Right-handed alpha
Helix 81
AI9
K
653 663Right-handed alpha
Helix 82
AJ1
K
668 692Right-handed alpha
Helix 83
AJ2
K
723 746Right-handed alpha
Helix 84
AJ3
K
760 773Right-handed alpha
Helix 85
AJ4
K
782 793Right-handed alpha
Helix 86
AJ5
K
799 810Right-handed alpha
Helix 87
AJ6
K
825 830Right-handed 310
Helix 88
AJ7
K
848 861Right-handed alpha
Helix 89
AJ8
K
869 872Right-handed 310
Helix 90
AJ9
K
873 910Right-handed alpha
Helix 91
AK1
K
941 945Right-handed alpha
Helix 92
AK2
K
947 951Right-handed 310
Helix 93
AK3
L
120 132Right-handed alpha
Helix 94
AK4
L
149 156Right-handed alpha
Helix 95
AK5
L
178 182Right-handed alpha
Helix 96
AK6
L
196 207Right-handed alpha
Helix 97
AK7
L
211 220Right-handed alpha
Helix 98
AK8
M
315 319Right-handed alpha
Helix 99
AK9
M
331 342Right-handed alpha
Helix 100
AL1
M
357 372Right-handed alpha
Helix 101
AL2
M
381 396Right-handed alpha
Helix 102
AL3
M
421 431Right-handed alpha
Helix 103
AL4
M
432 436Right-handed 310
Helix 104
AL5
M
445 449Right-handed 310
Helix 105
AL6
M
452 465Right-handed alpha
Helix 106
AL7
M
481 492Right-handed alpha
Helix 107
AL8
M
529 540Right-handed alpha
Helix 108
AL9
M
614 619Right-handed alpha
Helix 109
AM1
M
619 624Right-handed alpha
Helix 110
AM2
M
635 646Right-handed alpha
Helix 111
AM3
M
655 668Right-handed alpha
Helix 112
AM4
M
669 671Right-handed 310
Helix 113
AM5
M
672 676Right-handed 310
Helix 114
AM6
M
678 689Right-handed alpha
Helix 115
AM7
M
700 713Right-handed alpha
Helix 116
AM8
M
723 726Right-handed 310
Helix 117
AM9
M
753 762Right-handed alpha
Helix 118
AN1
M
785 794Right-handed alpha
Helix 119
AN2
M
807 816Right-handed alpha
Helix 120
AN3
M
822 827Right-handed alpha
Helix 121
AN4
M
842 855Right-handed alpha
Helix 122
AN5
M
865 872Right-handed alpha
Helix 123
AN6
M
878 888Right-handed alpha
Helix 124
AN7
M
895 903Right-handed alpha
Helix 125
AN8
M
904 907Right-handed 310
Helix 126
AN9
M
925 945Right-handed alpha
Helix 127
AO1
M
950 955Right-handed alpha
Helix 128
AO2
M
964 974Right-handed alpha
Helix 129
AO3
M
976 982Right-handed alpha
Helix 130
AO4
M
987 1013Right-handed alpha
Helix 131
AO5
M
1014 1028Right-handed alpha
Helix 132
AO6
M
1031 1035Right-handed 310
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There are 43 sheets in PDB entry 8QCF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
37 40first strand
Strand 2
B
46 51anti-parallel
Strand 3
B
54 65anti-parallel
Strand 4
B
130 142anti-parallel
Strand 5
B
76 81parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
37 40first strand
Strand 2
B
46 51anti-parallel
Strand 3
B
54 65anti-parallel
Strand 4
B
130 142anti-parallel
Strand 5
B
124 126anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
163 164first strand
Strand 2
B
185 186anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
167 170first strand
Strand 2
B
173 176anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
218 221first strand
Strand 2
B
194 201anti-parallel
Strand 3
B
233 239anti-parallel
Strand 4
B
244 257anti-parallel
Strand 5
C
195 201anti-parallel
Strand 6
C
183 190anti-parallel
Strand 7
C
158 166anti-parallel
Strand 8
C
169 172anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
218 221first strand
Strand 2
B
194 201anti-parallel
Strand 3
B
233 239anti-parallel
Strand 4
B
244 257anti-parallel
Strand 5
C
205 206anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
25 29first strand
Strand 2
C
38 44anti-parallel
Strand 3
C
47 57anti-parallel
Strand 4
C
121 130anti-parallel
Strand 5
C
71 78parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
52 56first strand
Strand 2
D
76 82anti-parallel
Strand 3
D
85 97anti-parallel
Strand 4
D
209 220anti-parallel
Strand 5
D
131 136parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
52 56first strand
Strand 2
D
76 82anti-parallel
Strand 3
D
85 97anti-parallel
Strand 4
G
16 17anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
186 188first strand
Strand 2
D
175 178anti-parallel
Strand 3
D
242 248parallel
Strand 4
D
274 283anti-parallel
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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
328 332first strand
Strand 2
D
293 301anti-parallel
Strand 3
D
345 351anti-parallel
Strand 4
D
357 364anti-parallel
Strand 5
E
173 186anti-parallel
Strand 6
E
157 168anti-parallel
Strand 7
E
130 139anti-parallel
Strand 8
E
145 147anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
3 7first strand
Strand 2
E
15 21anti-parallel
Strand 3
E
24 34anti-parallel
Strand 4
E
87 96anti-parallel
Strand 5
E
47 53parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
34 38first strand
Strand 2
F
46 52anti-parallel
Strand 3
F
57 68anti-parallel
Strand 4
F
120 132anti-parallel
Strand 5
F
76 82parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
34 38first strand
Strand 2
F
46 52anti-parallel
Strand 3
F
57 68anti-parallel
Strand 4
F
120 132anti-parallel
Strand 5
F
115 116anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
153 157first strand
Strand 2
F
172 179anti-parallel
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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
196 199first strand
Strand 2
F
186 193anti-parallel
Strand 3
F
211 218anti-parallel
Strand 4
F
221 229anti-parallel
Strand 5
G
209 215anti-parallel
Strand 6
G
199 204anti-parallel
Strand 7
G
192 196anti-parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
45 50first strand
Strand 2
G
58 65anti-parallel
Strand 3
G
70 81anti-parallel
Strand 4
G
134 145anti-parallel
Strand 5
G
92 98parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
3 5first strand
Strand 2
H
40 44anti-parallel
Strand 3
H
54 58anti-parallel
Strand 4
H
20 21parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
25 27first strand
Strand 2
H
34 36anti-parallel
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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
148 150first strand
Strand 2
H
118 125anti-parallel
Strand 3
H
133 135anti-parallel
Strand 4
H
95 98parallel
Strand 5
H
83 87anti-parallel
Strand 6
H
71 79anti-parallel
Strand 7
H
118 125anti-parallel
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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
154 157first strand
Strand 2
H
193 197anti-parallel
Strand 3
H
185 189anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
54 55first strand
Strand 2
I
86 91anti-parallel
Strand 3
I
94 99anti-parallel
Strand 4
I
68 69parallel
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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
60 62first strand
Strand 2
I
79 82anti-parallel
Strand 3
I
73 76anti-parallel
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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
192 193first strand
Strand 2
I
168 176anti-parallel
Strand 3
I
182 185anti-parallel
Strand 4
I
134 137parallel
Strand 5
I
123 127anti-parallel
Strand 6
I
111 119anti-parallel
Strand 7
I
168 176anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
197 201first strand
Strand 2
I
230 235anti-parallel
Strand 3
I
221 225anti-parallel
Strand 4
I
214 217anti-parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
10 11first strand
Strand 2
J
62 68anti-parallel
Strand 3
J
105 111anti-parallel
Strand 4
J
34 37parallel
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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
16 18first strand
Strand 2
J
51 58anti-parallel
Strand 3
J
41 48anti-parallel
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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
253 256first strand
Strand 2
J
229 236anti-parallel
Strand 3
J
242 246anti-parallel
Strand 4
J
202 206parallel
Strand 5
J
150 158anti-parallel
Strand 6
J
138 146anti-parallel
Strand 7
J
229 236anti-parallel
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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
268 271first strand
Strand 2
J
274 276anti-parallel
Strand 3
J
283 284anti-parallel
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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
11 12first strand
Strand 2
K
18 27anti-parallel
Strand 3
K
32 41anti-parallel
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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
144 148first strand
Strand 2
K
110 114parallel
Strand 3
K
86 89parallel
Strand 4
K
191 195parallel
Strand 5
K
214 216parallel
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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
299 302first strand
Strand 2
K
287 290anti-parallel
Strand 3
K
274 279anti-parallel
Strand 4
K
315 320anti-parallel
Strand 5
K
390 397anti-parallel
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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
403 407first strand
Strand 2
K
420 426anti-parallel
Strand 3
K
434 438anti-parallel
Strand 4
K
464 472parallel
Strand 5
K
448 455anti-parallel
Strand 6
K
403 407anti-parallel
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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
532 533first strand
Strand 2
K
636 647parallel
Strand 3
K
620 630anti-parallel
Strand 4
K
564 571anti-parallel
Strand 5
K
552 558anti-parallel
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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
540 542first strand
Strand 2
K
650 652parallel
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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
594 595first strand
Strand 2
K
600 601anti-parallel
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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
751 754first strand
Strand 2
K
817 820anti-parallel
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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
917 922first strand
Strand 2
K
925 929anti-parallel
Strand 3
K
936 940anti-parallel
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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
952 954first strand
Strand 2
K
959 962anti-parallel
Strand 3
K
971 973anti-parallel
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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
981 983first strand
Strand 2
K
998 1000anti-parallel
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There are 9 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
303 306first strand
Strand 2
M
496 500parallel
Strand 3
M
346 350parallel
Strand 4
M
470 475parallel
Strand 5
M
438 443parallel
Strand 6
M
374 379parallel
Strand 7
M
416 420parallel
Strand 8
M
401 404parallel
Strand 9
M
409 410anti-parallel
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There are 7 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
518 522first strand
Strand 2
M
508 513anti-parallel
Strand 3
M
773 777parallel
Strand 4
M
735 738parallel
Strand 5
M
629 632parallel
Strand 6
M
718 721parallel
Strand 7
M
692 695parallel
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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
742 744first strand
Strand 2
M
749 751anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il