Analysis of interatomic Contacts of Structural Units in PDB entry:
8QCH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QCH entry

There are 4 chains in PDB entry 8QCH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 12	ILE 355
B	THR 12	ILE 355
C	THR 12	ILE 355
D	CYS 10	GLY 233

There are156 helices in PDB entry 8QCH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	18	Right-handed alpha
Helix 2	AA2	A	28	30	Right-handed 310
Helix 3	AA3	A	32	43	Right-handed alpha
Helix 4	AA4	A	44	47	Right-handed 310
Helix 5	AA5	A	49	53	Right-handed 310
Helix 6	AA6	A	62	77	Right-handed alpha
Helix 7	AA7	A	79	97	Right-handed alpha
Helix 8	AA8	A	117	135	Right-handed alpha
Helix 9	AA9	A	151	170	Right-handed alpha
Helix 10	AB1	A	187	190	Right-handed 310
Helix 11	AB2	A	191	202	Right-handed alpha
Helix 12	AB3	A	215	224	Right-handed alpha
Helix 13	AB4	A	243	253	Right-handed alpha
Helix 14	AB5	A	260	267	Right-handed alpha
Helix 15	AB6	A	272	276	Right-handed 310
Helix 16	AB7	A	277	283	Right-handed alpha
Helix 17	AB8	A	301	314	Right-handed alpha
Helix 18	AB9	A	316	327	Right-handed alpha
Helix 19	AC1	A	328	331	Right-handed 310
Helix 20	AC2	A	334	353	Right-handed alpha
Helix 21	AC3	B	13	18	Right-handed alpha
Helix 22	AC4	B	28	30	Right-handed 310
Helix 23	AC5	B	32	43	Right-handed alpha
Helix 24	AC6	B	44	47	Right-handed 310
Helix 25	AC7	B	49	53	Right-handed 310
Helix 26	AC8	B	62	77	Right-handed alpha
Helix 27	AC9	B	79	97	Right-handed alpha
Helix 28	AD1	B	117	135	Right-handed alpha
Helix 29	AD2	B	151	170	Right-handed alpha
Helix 30	AD3	B	187	190	Right-handed 310
Helix 31	AD4	B	191	202	Right-handed alpha
Helix 32	AD5	B	215	224	Right-handed alpha
Helix 33	AD6	B	243	253	Right-handed alpha
Helix 34	AD7	B	260	267	Right-handed alpha
Helix 35	AD8	B	272	276	Right-handed 310
Helix 36	AD9	B	277	283	Right-handed alpha
Helix 37	AE1	B	301	314	Right-handed alpha
Helix 38	AE2	B	316	327	Right-handed alpha
Helix 39	AE3	B	328	331	Right-handed 310
Helix 40	AE4	B	334	353	Right-handed alpha
Helix 41	AE5	C	13	18	Right-handed alpha
Helix 42	AE6	C	32	43	Right-handed alpha
Helix 43	AE7	C	44	47	Right-handed 310
Helix 44	AE8	C	49	53	Right-handed 310
Helix 45	AE9	C	62	77	Right-handed alpha
Helix 46	AF1	C	79	97	Right-handed alpha
Helix 47	AF2	C	111	115	Right-handed 310
Helix 48	AF3	C	117	135	Right-handed alpha
Helix 49	AF4	C	151	170	Right-handed alpha
Helix 50	AF5	C	187	190	Right-handed 310
Helix 51	AF6	C	191	202	Right-handed alpha
Helix 52	AF7	C	215	224	Right-handed alpha
Helix 53	AF8	C	243	253	Right-handed alpha
Helix 54	AF9	C	260	267	Right-handed alpha
Helix 55	AG1	C	272	276	Right-handed 310
Helix 56	AG2	C	277	283	Right-handed alpha
Helix 57	AG3	C	301	314	Right-handed alpha
Helix 58	AG4	C	316	327	Right-handed alpha
Helix 59	AG5	C	328	331	Right-handed 310
Helix 60	AG6	C	334	353	Right-handed alpha
Helix 61	AG7	D	13	18	Right-handed alpha
Helix 62	AG8	D	32	43	Right-handed alpha
Helix 63	AG9	D	44	47	Right-handed 310
Helix 64	AH1	D	49	53	Right-handed 310
Helix 65	AH2	D	62	77	Right-handed alpha
Helix 66	AH3	D	79	97	Right-handed alpha
Helix 67	AH4	D	117	134	Right-handed alpha
Helix 68	AH5	D	151	170	Right-handed alpha
Helix 69	AH6	D	188	202	Right-handed alpha
Helix 70	AH7	D	215	224	Right-handed alpha
Helix 71	AH8	D	243	253	Right-handed alpha
Helix 72	AH9	D	260	267	Right-handed alpha
Helix 73	AI1	D	272	276	Right-handed 310
Helix 74	AI2	D	277	284	Right-handed alpha
Helix 75	AI3	D	301	314	Right-handed alpha
Helix 76	AI4	D	316	327	Right-handed alpha
Helix 77	AI5	D	328	331	Right-handed 310
Helix 78	AI6	D	334	353	Right-handed alpha
Helix 79	AI7	E	13	18	Right-handed alpha
Helix 80	AI8	E	28	30	Right-handed 310
Helix 81	AI9	E	32	43	Right-handed alpha
Helix 82	AJ1	E	44	47	Right-handed 310
Helix 83	AJ2	E	49	53	Right-handed 310
Helix 84	AJ3	E	62	77	Right-handed alpha
Helix 85	AJ4	E	79	97	Right-handed alpha
Helix 86	AJ5	E	117	135	Right-handed alpha
Helix 87	AJ6	E	151	170	Right-handed alpha
Helix 88	AJ7	E	187	190	Right-handed 310
Helix 89	AJ8	E	191	202	Right-handed alpha
Helix 90	AJ9	E	215	224	Right-handed alpha
Helix 91	AK1	E	243	253	Right-handed alpha
Helix 92	AK2	E	260	267	Right-handed alpha
Helix 93	AK3	E	272	276	Right-handed 310
Helix 94	AK4	E	277	283	Right-handed alpha
Helix 95	AK5	E	301	314	Right-handed alpha
Helix 96	AK6	E	316	327	Right-handed alpha
Helix 97	AK7	E	328	331	Right-handed 310
Helix 98	AK8	E	334	353	Right-handed alpha
Helix 99	AK9	F	13	18	Right-handed alpha
Helix 100	AL1	F	28	30	Right-handed 310
Helix 101	AL2	F	32	43	Right-handed alpha
Helix 102	AL3	F	44	47	Right-handed 310
Helix 103	AL4	F	49	53	Right-handed 310
Helix 104	AL5	F	62	77	Right-handed alpha
Helix 105	AL6	F	79	97	Right-handed alpha
Helix 106	AL7	F	117	135	Right-handed alpha
Helix 107	AL8	F	151	170	Right-handed alpha
Helix 108	AL9	F	188	202	Right-handed alpha
Helix 109	AM1	F	215	224	Right-handed alpha
Helix 110	AM2	F	243	253	Right-handed alpha
Helix 111	AM3	F	260	267	Right-handed alpha
Helix 112	AM4	F	272	276	Right-handed 310
Helix 113	AM5	F	277	283	Right-handed alpha
Helix 114	AM6	F	301	314	Right-handed alpha
Helix 115	AM7	F	316	327	Right-handed alpha
Helix 116	AM8	F	328	331	Right-handed 310
Helix 117	AM9	F	334	353	Right-handed alpha
Helix 118	AN1	G	12	18	Right-handed alpha
Helix 119	AN2	G	28	30	Right-handed 310
Helix 120	AN3	G	32	43	Right-handed alpha
Helix 121	AN4	G	44	47	Right-handed 310
Helix 122	AN5	G	49	53	Right-handed 310
Helix 123	AN6	G	62	77	Right-handed alpha
Helix 124	AN7	G	79	97	Right-handed alpha
Helix 125	AN8	G	117	135	Right-handed alpha
Helix 126	AN9	G	151	170	Right-handed alpha
Helix 127	AO1	G	187	202	Right-handed alpha
Helix 128	AO2	G	215	224	Right-handed alpha
Helix 129	AO3	G	243	253	Right-handed alpha
Helix 130	AO4	G	260	267	Right-handed alpha
Helix 131	AO5	G	277	284	Right-handed alpha
Helix 132	AO6	G	301	314	Right-handed alpha
Helix 133	AO7	G	316	327	Right-handed alpha
Helix 134	AO8	G	328	331	Right-handed 310
Helix 135	AO9	G	334	353	Right-handed alpha
Helix 136	AP1	H	7	11	Right-handed 310
Helix 137	AP2	H	13	18	Right-handed alpha
Helix 138	AP3	H	28	31	Right-handed 310
Helix 139	AP4	H	32	43	Right-handed alpha
Helix 140	AP5	H	44	47	Right-handed 310
Helix 141	AP6	H	49	53	Right-handed 310
Helix 142	AP7	H	62	77	Right-handed alpha
Helix 143	AP8	H	79	97	Right-handed alpha
Helix 144	AP9	H	117	135	Right-handed alpha
Helix 145	AQ1	H	151	170	Right-handed alpha
Helix 146	AQ2	H	187	190	Right-handed 310
Helix 147	AQ3	H	191	201	Right-handed alpha
Helix 148	AQ4	H	215	224	Right-handed alpha
Helix 149	AQ5	H	243	253	Right-handed alpha
Helix 150	AQ6	H	260	267	Right-handed alpha
Helix 151	AQ7	H	272	276	Right-handed 310
Helix 152	AQ8	H	277	284	Right-handed alpha
Helix 153	AQ9	H	301	314	Right-handed alpha
Helix 154	AR1	H	316	327	Right-handed alpha
Helix 155	AR2	H	328	331	Right-handed 310
Helix 156	AR3	H	334	353	Right-handed alpha

There are 8 sheets in PDB entry 8QCH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	26	first strand
Strand 2	A	99	106	parallel
Strand 3	A	140	148	parallel
Strand 4	A	174	180	parallel
Strand 5	A	204	209	parallel
Strand 6	A	229	232	parallel
Strand 7	A	257	259	parallel
Strand 8	A	288	290	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	26	first strand
Strand 2	B	99	106	parallel
Strand 3	B	140	148	parallel
Strand 4	B	174	180	parallel
Strand 5	B	204	209	parallel
Strand 6	B	229	232	parallel
Strand 7	B	257	259	parallel
Strand 8	B	288	290	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	26	first strand
Strand 2	C	99	106	parallel
Strand 3	C	140	148	parallel
Strand 4	C	174	180	parallel
Strand 5	C	204	209	parallel
Strand 6	C	229	232	parallel
Strand 7	C	257	259	parallel
Strand 8	C	288	290	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	26	first strand
Strand 2	D	99	106	parallel
Strand 3	D	140	148	parallel
Strand 4	D	174	180	parallel
Strand 5	D	204	209	parallel
Strand 6	D	229	232	parallel
Strand 7	D	257	259	parallel
Strand 8	D	288	290	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	26	first strand
Strand 2	E	99	106	parallel
Strand 3	E	140	148	parallel
Strand 4	E	174	180	parallel
Strand 5	E	204	209	parallel
Strand 6	E	229	232	parallel
Strand 7	E	257	259	parallel
Strand 8	E	288	290	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	20	26	first strand
Strand 2	F	99	106	parallel
Strand 3	F	140	148	parallel
Strand 4	F	174	180	parallel
Strand 5	F	204	209	parallel
Strand 6	F	229	232	parallel
Strand 7	F	257	259	parallel
Strand 8	F	288	290	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	20	26	first strand
Strand 2	G	99	106	parallel
Strand 3	G	140	148	parallel
Strand 4	G	174	180	parallel
Strand 5	G	204	209	parallel
Strand 6	G	229	232	parallel
Strand 7	G	257	259	parallel
Strand 8	G	288	290	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	20	26	first strand
Strand 2	H	99	106	parallel
Strand 3	H	140	148	parallel
Strand 4	H	174	180	parallel
Strand 5	H	204	209	parallel
Strand 6	H	229	232	parallel
Strand 7	H	257	259	parallel
Strand 8	H	288	290	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QCH

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QCH