Analysis of interatomic Contacts of Structural Units in PDB entry:
8QCI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QCI entry

There are 2 chains in PDB entry 8QCI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PRO 4081GLU 4349
A
 ALA 4071ASP 4080
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 8QCI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
4206 4210Right-handed 310
Helix 2
AA2
B
4223 4227Right-handed 310
Helix 3
AA3
B
4238 4246Right-handed alpha
Helix 4
AA4
B
4267 4269Right-handed 310
Helix 5
AA5
B
4270 4276Right-handed alpha
Helix 6
AA6
B
4280 4284Right-handed 310
Helix 7
AA7
B
4291 4296Right-handed alpha
Helix 8
AA8
B
4300 4314Right-handed alpha
Helix 9
AA9
B
4317 4335Right-handed alpha
Helix 10
AB1
B
4341 4346Right-handed alpha
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There are 2 sheets in PDB entry 8QCI. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4090 4092first strand
Strand 2
B
4082 4084anti-parallel
Strand 3
A
4073 4078anti-parallel
Strand 4
B
4201 4205anti-parallel
Strand 5
B
4192 4195anti-parallel
Strand 6
B
4182 4187anti-parallel
Strand 7
B
4174 4179anti-parallel
Strand 8
B
4167 4169anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4098 4103first strand
Strand 2
B
4117 4126anti-parallel
Strand 3
B
4131 4141anti-parallel
Strand 4
B
4144 4149anti-parallel
Strand 5
B
4155 4158anti-parallel
Strand 6
B
4161 4164anti-parallel
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