Analysis of interatomic Contacts of Structural Units in PDB entry:
8QCJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QCJ entry

There are 2 chains in PDB entry 8QCJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ILE 458
B	MET 1	ILE 458

There are 40 helices in PDB entry 8QCJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	17	Right-handed 310
Helix 2	AA2	A	19	23	Right-handed 310
Helix 3	AA3	A	36	43	Right-handed alpha
Helix 4	AA4	A	43	63	Right-handed alpha
Helix 5	AA5	A	64	66	Right-handed 310
Helix 6	AA6	A	76	102	Right-handed alpha
Helix 7	AA7	A	147	152	Right-handed alpha
Helix 8	AA8	A	160	164	Right-handed 310
Helix 9	AA9	A	177	191	Right-handed alpha
Helix 10	AB1	A	208	221	Right-handed alpha
Helix 11	AB2	A	266	269	Right-handed 310
Helix 12	AB3	A	270	275	Right-handed 310
Helix 13	AB4	A	301	304	Right-handed 310
Helix 14	AB5	A	309	324	Right-handed alpha
Helix 15	AB6	A	359	366	Right-handed alpha
Helix 16	AB7	A	380	387	Right-handed alpha
Helix 17	AB8	A	413	418	Right-handed alpha
Helix 18	AB9	A	418	427	Right-handed alpha
Helix 19	AC1	A	430	437	Right-handed alpha
Helix 20	AC2	A	446	455	Right-handed alpha
Helix 21	AC3	B	12	17	Right-handed 310
Helix 22	AC4	B	19	23	Right-handed 310
Helix 23	AC5	B	36	43	Right-handed alpha
Helix 24	AC6	B	43	62	Right-handed alpha
Helix 25	AC7	B	63	66	Right-handed 310
Helix 26	AC8	B	76	101	Right-handed alpha
Helix 27	AC9	B	147	152	Right-handed alpha
Helix 28	AD1	B	160	164	Right-handed 310
Helix 29	AD2	B	177	191	Right-handed alpha
Helix 30	AD3	B	208	221	Right-handed alpha
Helix 31	AD4	B	266	269	Right-handed 310
Helix 32	AD5	B	270	275	Right-handed 310
Helix 33	AD6	B	301	304	Right-handed 310
Helix 34	AD7	B	309	324	Right-handed alpha
Helix 35	AD8	B	359	366	Right-handed alpha
Helix 36	AD9	B	380	386	Right-handed alpha
Helix 37	AE1	B	413	418	Right-handed alpha
Helix 38	AE2	B	418	427	Right-handed alpha
Helix 39	AE3	B	430	437	Right-handed alpha
Helix 40	AE4	B	446	455	Right-handed alpha

There are 13 sheets in PDB entry 8QCJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	109	first strand
Strand 2	A	27	30	parallel
Strand 3	A	2	9	parallel
Strand 4	A	128	136	parallel
Strand 5	A	120	122	anti-parallel
Strand 6	A	114	115	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	109	first strand
Strand 2	A	27	30	parallel
Strand 3	A	2	9	parallel
Strand 4	A	128	136	parallel
Strand 5	A	297	299	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	75	first strand
Strand 2	B	68	75	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	142	first strand
Strand 2	A	262	264	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	226	first strand
Strand 2	A	193	197	parallel
Strand 3	A	170	174	parallel
Strand 4	A	255	258	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	237	first strand
Strand 2	A	240	245	anti-parallel
Strand 3	A	250	253	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	347	first strand
Strand 2	A	353	357	anti-parallel
Strand 3	A	404	410	anti-parallel
Strand 4	A	392	398	anti-parallel
Strand 5	A	370	376	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	109	first strand
Strand 2	B	27	30	parallel
Strand 3	B	2	9	parallel
Strand 4	B	128	136	parallel
Strand 5	B	120	122	anti-parallel
Strand 6	B	114	115	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	109	first strand
Strand 2	B	27	30	parallel
Strand 3	B	2	9	parallel
Strand 4	B	128	136	parallel
Strand 5	B	297	299	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	142	first strand
Strand 2	B	262	264	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	156	first strand
Strand 2	B	255	258	parallel
Strand 3	B	170	174	parallel
Strand 4	B	193	197	parallel
Strand 5	B	224	226	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	237	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	253	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	347	first strand
Strand 2	B	353	357	anti-parallel
Strand 3	B	404	410	anti-parallel
Strand 4	B	392	398	anti-parallel
Strand 5	B	370	376	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QCJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QCJ