Analysis of interatomic Contacts of Structural Units in PDB entry:
8QCL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QCL entry

There are 2 chains in PDB entry 8QCL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 26ASN 426
B
 LYS 27LYS 425
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 39 helices in PDB entry 8QCL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 33Right-handed alpha
Helix 2
AA2
A
36 40Right-handed 310
Helix 3
AA3
A
59 66Right-handed alpha
Helix 4
AA4
A
66 79Right-handed alpha
Helix 5
AA5
A
148 152Right-handed 310
Helix 6
AA6
A
177 181Right-handed 310
Helix 7
AA7
A
182 189Right-handed alpha
Helix 8
AA8
A
199 201Right-handed 310
Helix 9
AA9
A
213 218Right-handed 310
Helix 10
AB1
A
231 248Right-handed alpha
Helix 11
AB2
A
264 277Right-handed alpha
Helix 12
AB3
A
295 299Right-handed 310
Helix 13
AB4
A
303 311Right-handed alpha
Helix 14
AB5
A
316 323Right-handed 310
Helix 15
AB6
A
325 329Right-handed 310
Helix 16
AB7
A
333 339Right-handed alpha
Helix 17
AB8
A
353 356Right-handed 310
Helix 18
AB9
A
357 374Right-handed alpha
Helix 19
AC1
A
409 425Right-handed alpha
Helix 20
AC2
B
29 33Right-handed 310
Helix 21
AC3
B
36 40Right-handed 310
Helix 22
AC4
B
59 66Right-handed alpha
Helix 23
AC5
B
66 79Right-handed alpha
Helix 24
AC6
B
148 152Right-handed 310
Helix 25
AC7
B
177 181Right-handed 310
Helix 26
AC8
B
182 189Right-handed alpha
Helix 27
AC9
B
199 201Right-handed 310
Helix 28
AD1
B
213 218Right-handed 310
Helix 29
AD2
B
231 249Right-handed alpha
Helix 30
AD3
B
264 277Right-handed alpha
Helix 31
AD4
B
295 299Right-handed 310
Helix 32
AD5
B
303 311Right-handed alpha
Helix 33
AD6
B
316 323Right-handed 310
Helix 34
AD7
B
325 329Right-handed 310
Helix 35
AD8
B
332 339Right-handed alpha
Helix 36
AD9
B
353 356Right-handed 310
Helix 37
AE1
B
357 367Right-handed alpha
Helix 38
AE2
B
368 375Right-handed alpha
Helix 39
AE3
B
409 425Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 8QCL. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 101first strand
Strand 2
A
106 114anti-parallel
Strand 3
A
123 131anti-parallel
Strand 4
A
192 197anti-parallel
Strand 5
A
138 145parallel
Strand 6
A
253 263parallel
Strand 7
A
282 286parallel
Strand 8
A
345 350parallel
Strand 9
A
397 402parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 98first strand
Strand 2
B
106 114anti-parallel
Strand 3
B
123 131anti-parallel
Strand 4
B
192 197anti-parallel
Strand 5
B
138 145parallel
Strand 6
B
253 263parallel
Strand 7
B
282 286parallel
Strand 8
B
345 350parallel
Strand 9
B
397 402parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il