Analysis of interatomic Contacts of Structural Units in PDB entry:
8QCM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QCM entry

There are 6 chains in PDB entry 8QCM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 34	TYR 654
C	ASP 1	ARG 107
D	VAL 2	SER 119
E	ASP 1	ARG 107
F	VAL 2	SER 119
B	GLY 34	TYR 654

There are 64 helices in PDB entry 8QCM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	85	95	Right-handed alpha
Helix 2	AA2	A	116	121	Right-handed alpha
Helix 3	AA3	A	135	148	Right-handed alpha
Helix 4	AA4	A	153	169	Right-handed alpha
Helix 5	AA5	A	170	174	Right-handed 310
Helix 6	AA6	A	187	201	Right-handed alpha
Helix 7	AA7	A	217	234	Right-handed alpha
Helix 8	AA8	A	246	251	Right-handed alpha
Helix 9	AA9	A	269	271	Right-handed 310
Helix 10	AB1	A	272	281	Right-handed alpha
Helix 11	AB2	A	289	300	Right-handed alpha
Helix 12	AB3	A	329	338	Right-handed alpha
Helix 13	AB4	A	339	353	Right-handed alpha
Helix 14	AB5	A	372	391	Right-handed alpha
Helix 15	AB6	A	392	413	Right-handed alpha
Helix 16	AB7	A	421	440	Right-handed alpha
Helix 17	AB8	A	441	444	Right-handed 310
Helix 18	AB9	A	445	450	Right-handed alpha
Helix 19	AC1	A	451	461	Right-handed alpha
Helix 20	AC2	A	465	477	Right-handed alpha
Helix 21	AC3	A	477	482	Right-handed alpha
Helix 22	AC4	A	483	498	Right-handed alpha
Helix 23	AC5	A	502	529	Right-handed alpha
Helix 24	AC6	A	534	551	Right-handed alpha
Helix 25	AC7	A	557	561	Right-handed 310
Helix 26	AC8	A	562	567	Right-handed alpha
Helix 27	AC9	A	568	571	Right-handed 310
Helix 28	AD1	A	572	587	Right-handed alpha
Helix 29	AD2	A	609	617	Right-handed alpha
Helix 30	AD3	A	623	650	Right-handed alpha
Helix 31	AD4	C	79	83	Right-handed 310
Helix 32	AD5	D	87	91	Right-handed 310
Helix 33	AD6	E	79	83	Right-handed 310
Helix 34	AD7	F	87	91	Right-handed 310
Helix 35	AD8	B	85	95	Right-handed alpha
Helix 36	AD9	B	116	121	Right-handed alpha
Helix 37	AE1	B	135	148	Right-handed alpha
Helix 38	AE2	B	153	169	Right-handed alpha
Helix 39	AE3	B	170	174	Right-handed 310
Helix 40	AE4	B	187	201	Right-handed alpha
Helix 41	AE5	B	217	234	Right-handed alpha
Helix 42	AE6	B	246	251	Right-handed alpha
Helix 43	AE7	B	269	271	Right-handed 310
Helix 44	AE8	B	272	281	Right-handed alpha
Helix 45	AE9	B	289	300	Right-handed alpha
Helix 46	AF1	B	329	338	Right-handed alpha
Helix 47	AF2	B	339	353	Right-handed alpha
Helix 48	AF3	B	372	391	Right-handed alpha
Helix 49	AF4	B	392	413	Right-handed alpha
Helix 50	AF5	B	421	440	Right-handed alpha
Helix 51	AF6	B	441	444	Right-handed 310
Helix 52	AF7	B	445	450	Right-handed alpha
Helix 53	AF8	B	451	461	Right-handed alpha
Helix 54	AF9	B	465	477	Right-handed alpha
Helix 55	AG1	B	477	482	Right-handed alpha
Helix 56	AG2	B	483	498	Right-handed alpha
Helix 57	AG3	B	502	529	Right-handed alpha
Helix 58	AG4	B	534	551	Right-handed alpha
Helix 59	AG5	B	557	561	Right-handed 310
Helix 60	AG6	B	562	567	Right-handed alpha
Helix 61	AG7	B	568	571	Right-handed 310
Helix 62	AG8	B	572	587	Right-handed alpha
Helix 63	AG9	B	609	617	Right-handed alpha
Helix 64	AH1	B	623	650	Right-handed alpha

There are 16 sheets in PDB entry 8QCM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	71	first strand
Strand 2	A	37	45	anti-parallel
Strand 3	A	105	108	anti-parallel
Strand 4	A	111	112	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	124	first strand
Strand 2	A	206	210	parallel
Strand 3	A	237	241	parallel
Strand 4	A	74	79	parallel
Strand 5	A	255	260	parallel
Strand 6	A	263	268	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	6	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	70	76	anti-parallel
Strand 4	C	62	67	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	102	106	parallel
Strand 3	C	85	90	anti-parallel
Strand 4	C	33	38	anti-parallel
Strand 5	C	45	49	anti-parallel
Strand 6	C	53	54	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	102	106	parallel
Strand 3	C	85	90	anti-parallel
Strand 4	C	97	98	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	17	25	anti-parallel
Strand 3	D	78	84	anti-parallel
Strand 4	D	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	113	117	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	34	41	anti-parallel
Strand 5	D	45	53	anti-parallel
Strand 6	D	58	60	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	113	117	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	106	109	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	6	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	70	76	anti-parallel
Strand 4	E	62	67	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	102	106	parallel
Strand 3	E	85	90	anti-parallel
Strand 4	E	33	38	anti-parallel
Strand 5	E	45	49	anti-parallel
Strand 6	E	53	54	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	102	106	parallel
Strand 3	E	85	90	anti-parallel
Strand 4	E	97	98	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	17	25	anti-parallel
Strand 3	F	78	84	anti-parallel
Strand 4	F	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	113	117	parallel
Strand 3	F	92	99	anti-parallel
Strand 4	F	34	41	anti-parallel
Strand 5	F	45	53	anti-parallel
Strand 6	F	58	60	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	113	117	parallel
Strand 3	F	92	99	anti-parallel
Strand 4	F	106	109	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	71	first strand
Strand 2	B	37	45	anti-parallel
Strand 3	B	105	108	anti-parallel
Strand 4	B	111	112	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	124	first strand
Strand 2	B	206	210	parallel
Strand 3	B	237	241	parallel
Strand 4	B	74	79	parallel
Strand 5	B	255	260	parallel
Strand 6	B	263	268	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QCM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QCM