Analysis of interatomic Contacts of Structural Units in PDB entry:
8QD4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QD4 entry

There are 4 chains in PDB entry 8QD4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3SER 400
B
 ARG 3SER 400
C
 ARG 3SER 400
D
 ARG 3SER 400
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 86 helices in PDB entry 8QD4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 12Right-handed 310
Helix 2
AA2
A
19 27Right-handed alpha
Helix 3
AA3
A
27 35Right-handed alpha
Helix 4
AA4
A
43 57Right-handed alpha
Helix 5
AA5
A
64 70Right-handed alpha
Helix 6
AA6
A
71 88Right-handed alpha
Helix 7
AA7
A
90 109Right-handed alpha
Helix 8
AA8
A
120 137Right-handed alpha
Helix 9
AA9
A
194 204Right-handed alpha
Helix 10
AB1
A
227 243Right-handed alpha
Helix 11
AB2
A
259 270Right-handed alpha
Helix 12
AB3
A
271 274Right-handed 310
Helix 13
AB4
A
285 288Right-handed 310
Helix 14
AB5
A
289 294Right-handed alpha
Helix 15
AB6
A
295 299Right-handed 310
Helix 16
AB7
A
305 313Right-handed alpha
Helix 17
AB8
A
317 330Right-handed alpha
Helix 18
AB9
A
335 339Right-handed 310
Helix 19
AC1
A
357 362Right-handed alpha
Helix 20
AC2
A
363 366Right-handed 310
Helix 21
AC3
A
387 398Right-handed alpha
Helix 22
AC4
B
6 12Right-handed 310
Helix 23
AC5
B
19 27Right-handed alpha
Helix 24
AC6
B
27 35Right-handed alpha
Helix 25
AC7
B
43 58Right-handed alpha
Helix 26
AC8
B
64 69Right-handed alpha
Helix 27
AC9
B
71 89Right-handed alpha
Helix 28
AD1
B
90 109Right-handed alpha
Helix 29
AD2
B
120 138Right-handed alpha
Helix 30
AD3
B
194 204Right-handed alpha
Helix 31
AD4
B
227 242Right-handed alpha
Helix 32
AD5
B
259 270Right-handed alpha
Helix 33
AD6
B
271 274Right-handed 310
Helix 34
AD7
B
285 288Right-handed 310
Helix 35
AD8
B
289 294Right-handed alpha
Helix 36
AD9
B
295 299Right-handed 310
Helix 37
AE1
B
305 313Right-handed alpha
Helix 38
AE2
B
317 330Right-handed alpha
Helix 39
AE3
B
335 339Right-handed 310
Helix 40
AE4
B
357 362Right-handed alpha
Helix 41
AE5
B
363 366Right-handed 310
Helix 42
AE6
B
387 398Right-handed alpha
Helix 43
AE7
C
6 12Right-handed 310
Helix 44
AE8
C
19 27Right-handed alpha
Helix 45
AE9
C
27 35Right-handed alpha
Helix 46
AF1
C
43 58Right-handed alpha
Helix 47
AF2
C
64 70Right-handed alpha
Helix 48
AF3
C
71 89Right-handed alpha
Helix 49
AF4
C
90 109Right-handed alpha
Helix 50
AF5
C
120 138Right-handed alpha
Helix 51
AF6
C
190 193Right-handed 310
Helix 52
AF7
C
194 204Right-handed alpha
Helix 53
AF8
C
227 242Right-handed alpha
Helix 54
AF9
C
258 270Right-handed alpha
Helix 55
AG1
C
271 274Right-handed 310
Helix 56
AG2
C
285 288Right-handed 310
Helix 57
AG3
C
289 296Right-handed alpha
Helix 58
AG4
C
297 299Right-handed 310
Helix 59
AG5
C
305 313Right-handed alpha
Helix 60
AG6
C
317 330Right-handed alpha
Helix 61
AG7
C
335 339Right-handed 310
Helix 62
AG8
C
357 362Right-handed alpha
Helix 63
AG9
C
363 366Right-handed 310
Helix 64
AH1
C
379 383Right-handed 310
Helix 65
AH2
C
386 398Right-handed alpha
Helix 66
AH3
D
6 12Right-handed 310
Helix 67
AH4
D
19 27Right-handed alpha
Helix 68
AH5
D
27 35Right-handed alpha
Helix 69
AH6
D
43 57Right-handed alpha
Helix 70
AH7
D
64 69Right-handed alpha
Helix 71
AH8
D
71 88Right-handed alpha
Helix 72
AH9
D
90 109Right-handed alpha
Helix 73
AI1
D
120 139Right-handed alpha
Helix 74
AI2
D
194 204Right-handed alpha
Helix 75
AI3
D
227 243Right-handed alpha
Helix 76
AI4
D
259 270Right-handed alpha
Helix 77
AI5
D
285 288Right-handed 310
Helix 78
AI6
D
289 296Right-handed alpha
Helix 79
AI7
D
297 299Right-handed 310
Helix 80
AI8
D
305 313Right-handed alpha
Helix 81
AI9
D
317 330Right-handed alpha
Helix 82
AJ1
D
335 339Right-handed 310
Helix 83
AJ2
D
357 362Right-handed alpha
Helix 84
AJ3
D
363 366Right-handed 310
Helix 85
AJ4
D
379 383Right-handed 310
Helix 86
AJ5
D
385 398Right-handed alpha
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There are 3 sheets in PDB entry 8QD4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 16 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 150first strand
Strand 2
A
161 167anti-parallel
Strand 3
A
207 211anti-parallel
Strand 4
A
178 184parallel
Strand 5
A
246 256parallel
Strand 6
A
276 280parallel
Strand 7
A
343 349parallel
Strand 8
A
370 375parallel
Strand 9
B
370 375anti-parallel
Strand 10
B
343 349parallel
Strand 11
B
276 280parallel
Strand 12
B
246 256parallel
Strand 13
B
178 184parallel
Strand 14
B
207 211parallel
Strand 15
B
161 167anti-parallel
Strand 16
B
145 150anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
145 150first strand
Strand 2
C
161 167anti-parallel
Strand 3
C
207 211anti-parallel
Strand 4
C
178 184parallel
Strand 5
C
246 256parallel
Strand 6
C
276 280parallel
Strand 7
C
343 349parallel
Strand 8
C
371 375parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
145 150first strand
Strand 2
D
161 167anti-parallel
Strand 3
D
207 211anti-parallel
Strand 4
D
178 184parallel
Strand 5
D
246 256parallel
Strand 6
D
276 280parallel
Strand 7
D
343 349parallel
Strand 8
D
371 375parallel
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