Analysis of interatomic Contacts of Structural Units in PDB entry:
8QDI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QDI entry

There are 2 chains in PDB entry 8QDI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 20SER 214
B
 GLY 2LEU 119
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8QDI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 39Right-handed alpha
Helix 2
AA2
A
40 44Right-handed 310
Helix 3
AA3
A
57 68Right-handed alpha
Helix 4
AA4
A
79 93Right-handed alpha
Helix 5
AA5
A
129 133Right-handed 310
Helix 6
AA6
A
137 143Right-handed alpha
Helix 7
AA7
A
145 148Right-handed 310
Helix 8
AA8
A
149 156Right-handed alpha
Helix 9
AA9
A
158 162Right-handed alpha
Helix 10
AB1
A
178 189Right-handed alpha
Helix 11
AB2
B
3 8Right-handed alpha
Helix 12
AB3
B
17 22Right-handed 310
Helix 13
AB4
B
39 47Right-handed alpha
Helix 14
AB5
B
48 50Right-handed 310
Helix 15
AB6
B
51 62Right-handed alpha
Helix 16
AB7
B
74 77Right-handed 310
Helix 17
AB8
B
78 91Right-handed alpha
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There are 2 sheets in PDB entry 8QDI. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 101first strand
Strand 2
A
72 77parallel
Strand 3
A
48 52parallel
Strand 4
A
116 121parallel
Strand 5
A
163 174parallel
Strand 6
A
204 213anti-parallel
Strand 7
A
191 201anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 33first strand
Strand 2
B
92 100anti-parallel
Strand 3
B
107 111anti-parallel
Strand 4
B
114 115anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il