Analysis of interatomic Contacts of Structural Units in PDB entry:
8QDQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QDQ entry

There are 2 chains in PDB entry 8QDQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 67	ILE 901
B	SER 67	ILE 901

There are 82 helices in PDB entry 8QDQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	82	88	Right-handed alpha
Helix 2	AA2	A	148	152	Right-handed 310
Helix 3	AA3	A	209	213	Right-handed 310
Helix 4	AA4	A	214	216	Right-handed 310
Helix 5	AA5	A	217	230	Right-handed alpha
Helix 6	AA6	A	257	261	Right-handed 310
Helix 7	AA7	A	300	309	Right-handed 310
Helix 8	AA8	A	313	324	Right-handed alpha
Helix 9	AA9	A	324	333	Right-handed alpha
Helix 10	AB1	A	342	352	Right-handed alpha
Helix 11	AB2	A	361	369	Right-handed alpha
Helix 12	AB3	A	389	395	Right-handed alpha
Helix 13	AB4	A	397	400	Right-handed 310
Helix 14	AB5	A	401	412	Right-handed alpha
Helix 15	AB6	A	431	436	Right-handed alpha
Helix 16	AB7	A	443	452	Right-handed alpha
Helix 17	AB8	A	456	463	Right-handed alpha
Helix 18	AB9	A	471	476	Right-handed alpha
Helix 19	AC1	A	478	483	Right-handed alpha
Helix 20	AC2	A	532	557	Right-handed alpha
Helix 21	AC3	A	563	578	Right-handed alpha
Helix 22	AC4	A	582	593	Right-handed alpha
Helix 23	AC5	A	594	606	Right-handed alpha
Helix 24	AC6	A	611	617	Right-handed alpha
Helix 25	AC7	A	619	621	Right-handed 310
Helix 26	AC8	A	622	635	Right-handed alpha
Helix 27	AC9	A	636	640	Right-handed 310
Helix 28	AD1	A	641	649	Right-handed alpha
Helix 29	AD2	A	658	660	Right-handed 310
Helix 30	AD3	A	669	694	Right-handed alpha
Helix 31	AD4	A	696	702	Right-handed alpha
Helix 32	AD5	A	703	716	Right-handed alpha
Helix 33	AD6	A	718	722	Right-handed 310
Helix 34	AD7	A	732	748	Right-handed alpha
Helix 35	AD8	A	748	756	Right-handed alpha
Helix 36	AD9	A	757	763	Right-handed alpha
Helix 37	AE1	A	782	792	Right-handed alpha
Helix 38	AE2	A	792	801	Right-handed alpha
Helix 39	AE3	A	803	818	Right-handed alpha
Helix 40	AE4	A	832	837	Right-handed alpha
Helix 41	AE5	A	838	863	Right-handed alpha
Helix 42	AE6	B	82	88	Right-handed alpha
Helix 43	AE7	B	96	101	Right-handed alpha
Helix 44	AE8	B	209	213	Right-handed 310
Helix 45	AE9	B	214	216	Right-handed 310
Helix 46	AF1	B	217	230	Right-handed alpha
Helix 47	AF2	B	300	308	Right-handed 310
Helix 48	AF3	B	313	324	Right-handed alpha
Helix 49	AF4	B	324	333	Right-handed alpha
Helix 50	AF5	B	342	352	Right-handed alpha
Helix 51	AF6	B	364	369	Right-handed alpha
Helix 52	AF7	B	389	395	Right-handed alpha
Helix 53	AF8	B	397	400	Right-handed 310
Helix 54	AF9	B	401	412	Right-handed alpha
Helix 55	AG1	B	431	436	Right-handed alpha
Helix 56	AG2	B	443	452	Right-handed alpha
Helix 57	AG3	B	456	463	Right-handed alpha
Helix 58	AG4	B	471	476	Right-handed alpha
Helix 59	AG5	B	478	484	Right-handed alpha
Helix 60	AG6	B	532	557	Right-handed alpha
Helix 61	AG7	B	563	578	Right-handed alpha
Helix 62	AG8	B	582	593	Right-handed alpha
Helix 63	AG9	B	594	606	Right-handed alpha
Helix 64	AH1	B	611	617	Right-handed alpha
Helix 65	AH2	B	619	621	Right-handed 310
Helix 66	AH3	B	622	635	Right-handed alpha
Helix 67	AH4	B	636	640	Right-handed 310
Helix 68	AH5	B	641	649	Right-handed alpha
Helix 69	AH6	B	658	660	Right-handed 310
Helix 70	AH7	B	669	694	Right-handed alpha
Helix 71	AH8	B	696	702	Right-handed alpha
Helix 72	AH9	B	703	716	Right-handed alpha
Helix 73	AI1	B	718	722	Right-handed 310
Helix 74	AI2	B	732	748	Right-handed alpha
Helix 75	AI3	B	748	756	Right-handed alpha
Helix 76	AI4	B	757	763	Right-handed alpha
Helix 77	AI5	B	764	768	Right-handed 310
Helix 78	AI6	B	782	792	Right-handed alpha
Helix 79	AI7	B	792	801	Right-handed alpha
Helix 80	AI8	B	803	818	Right-handed alpha
Helix 81	AI9	B	832	838	Right-handed alpha
Helix 82	AJ1	B	838	863	Right-handed alpha

There are 11 sheets in PDB entry 8QDQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	190	first strand
Strand 2	A	167	175	anti-parallel
Strand 3	A	68	77	anti-parallel
Strand 4	A	138	147	anti-parallel
Strand 5	A	125	135	anti-parallel
Strand 6	A	104	111	anti-parallel
Strand 7	A	154	161	anti-parallel
Strand 8	A	200	203	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	246	first strand
Strand 2	A	276	277	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	356	first strand
Strand 2	A	382	384	anti-parallel
Strand 3	A	373	374	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	419	420	first strand
Strand 2	A	466	470	anti-parallel
Strand 3	A	492	499	anti-parallel
Strand 4	A	505	514	anti-parallel
Strand 5	A	523	527	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	652	654	first strand
Strand 2	A	662	664	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	190	first strand
Strand 2	B	167	175	anti-parallel
Strand 3	B	68	77	anti-parallel
Strand 4	B	138	147	anti-parallel
Strand 5	B	128	135	anti-parallel
Strand 6	B	104	111	anti-parallel
Strand 7	B	154	161	anti-parallel
Strand 8	B	200	203	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	246	first strand
Strand 2	B	276	277	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	284	first strand
Strand 2	B	287	291	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	356	first strand
Strand 2	B	382	384	anti-parallel
Strand 3	B	373	374	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	419	420	first strand
Strand 2	B	466	470	anti-parallel
Strand 3	B	492	499	anti-parallel
Strand 4	B	505	514	anti-parallel
Strand 5	B	523	527	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	652	654	first strand
Strand 2	B	662	664	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QDQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QDQ