Analysis of interatomic Contacts of Structural Units in PDB entry:
8QDR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QDR entry

There are 2 chains in PDB entry 8QDR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 66ILE 901
B
 SER 67ALA 704
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 8QDR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
96 103Right-handed alpha
Helix 2
AA2
A
209 213Right-handed 310
Helix 3
AA3
A
214 216Right-handed 310
Helix 4
AA4
A
217 230Right-handed alpha
Helix 5
AA5
A
257 261Right-handed 310
Helix 6
AA6
A
300 304Right-handed 310
Helix 7
AA7
A
397 400Right-handed 310
Helix 8
AA8
A
401 412Right-handed alpha
Helix 9
AA9
A
431 436Right-handed alpha
Helix 10
AB1
A
443 452Right-handed alpha
Helix 11
AB2
A
456 463Right-handed alpha
Helix 12
AB3
A
471 476Right-handed alpha
Helix 13
AB4
A
478 483Right-handed alpha
Helix 14
AB5
A
532 557Right-handed alpha
Helix 15
AB6
A
563 578Right-handed alpha
Helix 16
AB7
A
582 589Right-handed alpha
Helix 17
AB8
A
590 593Right-handed 310
Helix 18
AB9
A
594 606Right-handed alpha
Helix 19
AC1
A
611 617Right-handed alpha
Helix 20
AC2
A
619 621Right-handed 310
Helix 21
AC3
A
622 635Right-handed alpha
Helix 22
AC4
A
636 640Right-handed 310
Helix 23
AC5
A
641 649Right-handed alpha
Helix 24
AC6
A
658 660Right-handed 310
Helix 25
AC7
A
669 694Right-handed alpha
Helix 26
AC8
A
696 702Right-handed alpha
Helix 27
AC9
A
703 716Right-handed alpha
Helix 28
AD1
A
718 722Right-handed 310
Helix 29
AD2
A
732 748Right-handed alpha
Helix 30
AD3
A
748 755Right-handed alpha
Helix 31
AD4
A
782 792Right-handed alpha
Helix 32
AD5
A
792 801Right-handed alpha
Helix 33
AD6
A
803 814Right-handed alpha
Helix 34
AD7
A
832 838Right-handed alpha
Helix 35
AD8
A
838 863Right-handed alpha
Helix 36
AD9
B
95 99Right-handed 310
Helix 37
AE1
B
209 213Right-handed 310
Helix 38
AE2
B
214 216Right-handed 310
Helix 39
AE3
B
217 230Right-handed alpha
Helix 40
AE4
B
257 261Right-handed 310
Helix 41
AE5
B
300 304Right-handed 310
Helix 42
AE6
B
397 400Right-handed 310
Helix 43
AE7
B
401 412Right-handed alpha
Helix 44
AE8
B
431 436Right-handed alpha
Helix 45
AE9
B
443 452Right-handed alpha
Helix 46
AF1
B
456 463Right-handed alpha
Helix 47
AF2
B
471 476Right-handed alpha
Helix 48
AF3
B
478 484Right-handed alpha
Helix 49
AF4
B
532 557Right-handed alpha
Helix 50
AF5
B
563 578Right-handed alpha
Helix 51
AF6
B
582 589Right-handed alpha
Helix 52
AF7
B
590 593Right-handed 310
Helix 53
AF8
B
594 606Right-handed alpha
Helix 54
AF9
B
611 617Right-handed alpha
Helix 55
AG1
B
619 621Right-handed 310
Helix 56
AG2
B
622 635Right-handed alpha
Helix 57
AG3
B
636 640Right-handed 310
Helix 58
AG4
B
641 649Right-handed alpha
Helix 59
AG5
B
658 660Right-handed 310
Helix 60
AG6
B
669 694Right-handed alpha
Helix 61
AG7
B
696 702Right-handed alpha
Helix 62
AG8
B
703 716Right-handed alpha
Helix 63
AG9
B
718 722Right-handed 310
Helix 64
AH1
B
732 748Right-handed alpha
Helix 65
AH2
B
748 754Right-handed alpha
Helix 66
AH3
B
782 792Right-handed alpha
Helix 67
AH4
B
792 801Right-handed alpha
Helix 68
AH5
B
803 814Right-handed alpha
Helix 69
AH6
B
834 837Right-handed 310
Helix 70
AH7
B
838 863Right-handed alpha
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There are 9 sheets in PDB entry 8QDR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 135first strand
Strand 2
A
138 148anti-parallel
Strand 3
A
67 77anti-parallel
Strand 4
A
167 175anti-parallel
Strand 5
A
182 190anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 128first strand
Strand 2
A
105 111anti-parallel
Strand 3
A
154 161anti-parallel
Strand 4
A
200 203anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 246first strand
Strand 2
A
276 277anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 420first strand
Strand 2
A
466 470anti-parallel
Strand 3
A
492 499anti-parallel
Strand 4
A
505 514anti-parallel
Strand 5
A
523 527anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
652 654first strand
Strand 2
A
662 664anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 190first strand
Strand 2
B
167 175anti-parallel
Strand 3
B
68 77anti-parallel
Strand 4
B
138 147anti-parallel
Strand 5
B
125 135anti-parallel
Strand 6
B
105 111anti-parallel
Strand 7
B
154 161anti-parallel
Strand 8
B
200 203anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 246first strand
Strand 2
B
276 277anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
419 420first strand
Strand 2
B
466 470anti-parallel
Strand 3
B
492 499anti-parallel
Strand 4
B
505 514anti-parallel
Strand 5
B
523 527anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
652 654first strand
Strand 2
B
662 664anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il