Analysis of interatomic Contacts of Structural Units in PDB entry:
8QDV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QDV entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 10 chains in PDB entry 8QDV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 230
C
 ARG 211PRO 213
C
 LEU 215GLY 323
C
 LEU 325HIS 330
B
 MET 1SER 230
E
 MET 1SER 230
F
 SER 210PRO 213
F
 LEU 215GLY 323
F
 LEU 325ASN 327
G
 MET 1SER 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 8QDV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 16Right-handed alpha
Helix 2
AA2
A
18 32Right-handed alpha
Helix 3
AA3
A
37 69Right-handed alpha
Helix 4
AA4
A
74 104Right-handed alpha
Helix 5
AA5
A
111 131Right-handed alpha
Helix 6
AA6
A
137 160Right-handed alpha
Helix 7
AA7
A
164 181Right-handed alpha
Helix 8
AA8
A
184 202Right-handed alpha
Helix 9
AA9
A
203 206Right-handed 310
Helix 10
AB1
A
210 229Right-handed alpha
Helix 11
AB2
B
2 16Right-handed alpha
Helix 12
AB3
B
18 32Right-handed alpha
Helix 13
AB4
B
37 68Right-handed alpha
Helix 14
AB5
B
74 104Right-handed alpha
Helix 15
AB6
B
111 131Right-handed alpha
Helix 16
AB7
B
135 160Right-handed alpha
Helix 17
AB8
B
164 181Right-handed alpha
Helix 18
AB9
B
184 202Right-handed alpha
Helix 19
AC1
B
203 206Right-handed 310
Helix 20
AC2
B
210 229Right-handed alpha
Helix 21
AC3
E
2 16Right-handed alpha
Helix 22
AC4
E
18 32Right-handed alpha
Helix 23
AC5
E
37 69Right-handed alpha
Helix 24
AC6
E
76 104Right-handed alpha
Helix 25
AC7
E
111 131Right-handed alpha
Helix 26
AC8
E
137 160Right-handed alpha
Helix 27
AC9
E
164 181Right-handed alpha
Helix 28
AD1
E
184 202Right-handed alpha
Helix 29
AD2
E
203 206Right-handed 310
Helix 30
AD3
E
210 229Right-handed alpha
Helix 31
AD4
G
2 16Right-handed alpha
Helix 32
AD5
G
18 32Right-handed alpha
Helix 33
AD6
G
37 69Right-handed alpha
Helix 34
AD7
G
74 104Right-handed alpha
Helix 35
AD8
G
111 131Right-handed alpha
Helix 36
AD9
G
137 160Right-handed alpha
Helix 37
AE1
G
164 181Right-handed alpha
Helix 38
AE2
G
184 185Right-handed 310
Helix 39
AE3
G
187 187Right-handed 310
Helix 40
AE4
G
188 202Right-handed alpha
Helix 41
AE5
G
203 206Right-handed 310
Helix 42
AE6
G
210 229Right-handed alpha
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There are no sheets in PDB entry 8QDV
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