Analysis of interatomic Contacts of Structural Units in PDB entry:
8QE5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QE5 entry

There is 1 chain in PDB entry 8QE5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 226GLN 1609
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 8QE5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
239 251Right-handed alpha
Helix 2
AA2
A
264 282Right-handed alpha
Helix 3
AA3
A
306 323Right-handed alpha
Helix 4
AA4
A
328 343Right-handed alpha
Helix 5
AA5
A
345 353Right-handed alpha
Helix 6
AA6
A
379 391Right-handed alpha
Helix 7
AA7
A
409 429Right-handed alpha
Helix 8
AA8
A
450 458Right-handed alpha
Helix 9
AA9
A
458 463Right-handed alpha
Helix 10
AB1
A
463 468Right-handed alpha
Helix 11
AB2
A
470 489Right-handed alpha
Helix 12
AB3
A
539 543Right-handed 310
Helix 13
AB4
A
563 572Right-handed alpha
Helix 14
AB5
A
572 593Right-handed alpha
Helix 15
AB6
A
597 614Right-handed alpha
Helix 16
AB7
A
616 634Right-handed alpha
Helix 17
AB8
A
639 647Right-handed alpha
Helix 18
AB9
A
654 675Right-handed alpha
Helix 19
AC1
A
676 678Right-handed 310
Helix 20
AC2
A
712 726Right-handed alpha
Helix 21
AC3
A
735 760Right-handed alpha
Helix 22
AC4
A
760 767Right-handed alpha
Helix 23
AC5
A
769 777Right-handed alpha
Helix 24
AC6
A
786 802Right-handed alpha
Helix 25
AC7
A
804 814Right-handed alpha
Helix 26
AC8
A
824 829Right-handed 310
Helix 27
AC9
A
847 858Right-handed alpha
Helix 28
AD1
A
864 873Right-handed alpha
Helix 29
AD2
A
898 917Right-handed alpha
Helix 30
AD3
A
918 920Right-handed 310
Helix 31
AD4
A
932 947Right-handed alpha
Helix 32
AD5
A
982 992Right-handed alpha
Helix 33
AD6
A
999 1012Right-handed alpha
Helix 34
AD7
A
1020 1029Right-handed alpha
Helix 35
AD8
A
1034 1043Right-handed alpha
Helix 36
AD9
A
1061 1084Right-handed alpha
Helix 37
AE1
A
1113 1126Right-handed alpha
Helix 38
AE2
A
1128 1135Right-handed 310
Helix 39
AE3
A
1137 1153Right-handed alpha
Helix 40
AE4
A
1168 1181Right-handed alpha
Helix 41
AE5
A
1184 1195Right-handed alpha
Helix 42
AE6
A
1200 1218Right-handed alpha
Helix 43
AE7
A
1221 1241Right-handed alpha
Helix 44
AE8
A
1249 1253Right-handed 310
Helix 45
AE9
A
1257 1261Right-handed 310
Helix 46
AF1
A
1262 1266Right-handed 310
Helix 47
AF2
A
1272 1279Right-handed alpha
Helix 48
AF3
A
1282 1300Right-handed alpha
Helix 49
AF4
A
1301 1321Right-handed alpha
Helix 50
AF5
A
1326 1330Right-handed 310
Helix 51
AF6
A
1354 1365Right-handed alpha
Helix 52
AF7
A
1366 1370Right-handed 310
Helix 53
AF8
A
1375 1388Right-handed alpha
Helix 54
AF9
A
1389 1397Right-handed alpha
Helix 55
AG1
A
1403 1412Right-handed alpha
Helix 56
AG2
A
1425 1439Right-handed alpha
Helix 57
AG3
A
1443 1456Right-handed alpha
Helix 58
AG4
A
1458 1470Right-handed alpha
Helix 59
AG5
A
1502 1512Right-handed alpha
Helix 60
AG6
A
1514 1525Right-handed alpha
Helix 61
AG7
A
1527 1546Right-handed alpha
Helix 62
AG8
A
1552 1564Right-handed alpha
Helix 63
AG9
A
1581 1592Right-handed alpha
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There are 14 sheets in PDB entry 8QE5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 261first strand
Strand 2
A
637 638anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 285first strand
Strand 2
A
404 405parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 297first strand
Strand 2
A
536 537anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 503first strand
Strand 2
A
508 512anti-parallel
Strand 3
A
525 532anti-parallel
Strand 4
A
552 556anti-parallel
Strand 5
A
545 549anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 503first strand
Strand 2
A
508 512anti-parallel
Strand 3
A
525 532anti-parallel
Strand 4
A
560 562anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
679 685first strand
Strand 2
A
688 694anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
701 702first strand
Strand 2
A
709 710anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
833 837first strand
Strand 2
A
843 846anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
895 897first strand
Strand 2
A
877 881anti-parallel
Strand 3
A
1014 1018parallel
Strand 4
A
1049 1053anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
924 925first strand
Strand 2
A
1090 1096parallel
Strand 3
A
1099 1109anti-parallel
Strand 4
A
959 971anti-parallel
Strand 5
A
949 953anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
924 925first strand
Strand 2
A
1090 1096parallel
Strand 3
A
1099 1109anti-parallel
Strand 4
A
959 971anti-parallel
Strand 5
A
1163 1165anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1417 1419first strand
Strand 2
A
1422 1424anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1473 1479first strand
Strand 2
A
1597 1601anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1486 1490first strand
Strand 2
A
1570 1574anti-parallel
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