Analysis of interatomic Contacts of Structural Units in PDB entry:
8QE8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QE8 entry

There are 8 chains in PDB entry 8QE8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
4
 LYS 6ASN 273
5
 LYS 6SER 255
6
 LYS 6SER 255
A
 GLN 122PRO 629
3
 LYS 6ASN 273
2
 LYS 6SER 255
1
 LYS 6SER 255
B
 GLN 122PRO 629
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 8QE8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
1
22 38Right-handed alpha
Helix 2
2
1
63 73Right-handed alpha
Helix 3
3
1
85 85Right-handed alpha
Helix 4
4
1
95 106Right-handed alpha
Helix 5
5
1
158 164Right-handed alpha
Helix 6
6
1
171 180Right-handed alpha
Helix 7
7
1
191 198Right-handed alpha
Helix 8
8
1
201 206Right-handed alpha
Helix 9
9
1
223 231Right-handed alpha
Helix 10
10
1
242 251Right-handed alpha
Helix 11
13
2
22 37Right-handed alpha
Helix 12
14
2
63 73Right-handed alpha
Helix 13
15
2
85 88Right-handed alpha
Helix 14
16
2
95 106Right-handed alpha
Helix 15
17
2
158 164Right-handed alpha
Helix 16
18
2
171 180Right-handed alpha
Helix 17
19
2
191 198Right-handed alpha
Helix 18
20
2
201 206Right-handed alpha
Helix 19
21
2
223 231Right-handed alpha
Helix 20
22
2
242 250Right-handed alpha
Helix 21
25
3
22 37Right-handed alpha
Helix 22
26
3
63 73Right-handed alpha
Helix 23
27
3
85 88Right-handed alpha
Helix 24
28
3
95 106Right-handed alpha
Helix 25
29
3
158 164Right-handed alpha
Helix 26
30
3
171 180Right-handed alpha
Helix 27
31
3
191 198Right-handed alpha
Helix 28
32
3
201 206Right-handed alpha
Helix 29
33
3
223 231Right-handed alpha
Helix 30
34
3
242 251Right-handed alpha
Helix 31
35
3
256 260Right-handed alpha
Helix 32
36
3
269 273Right-handed alpha
Helix 33
37
5
22 38Right-handed alpha
Helix 34
38
5
63 73Right-handed alpha
Helix 35
39
5
85 88Right-handed alpha
Helix 36
40
5
95 106Right-handed alpha
Helix 37
41
5
158 164Right-handed alpha
Helix 38
42
5
171 180Right-handed alpha
Helix 39
43
5
191 198Right-handed alpha
Helix 40
44
5
201 206Right-handed alpha
Helix 41
45
5
223 231Right-handed alpha
Helix 42
46
5
242 251Right-handed alpha
Helix 43
49
6
22 38Right-handed alpha
Helix 44
50
6
63 73Right-handed alpha
Helix 45
51
6
85 85Right-handed alpha
Helix 46
16
6
95 106Right-handed alpha
Helix 47
53
6
158 164Right-handed alpha
Helix 48
54
6
171 180Right-handed alpha
Helix 49
55
6
191 198Right-handed alpha
Helix 50
56
6
201 206Right-handed alpha
Helix 51
57
6
223 231Right-handed alpha
Helix 52
58
6
242 251Right-handed alpha
Helix 53
61
B
122 135Right-handed alpha
Helix 54
61
B
144 150Right-handed alpha
Helix 55
63
B
286 299Right-handed alpha
Helix 56
66
A
286 299Right-handed alpha
Helix 57
61
A
144 150Right-handed alpha
Helix 58
61
A
122 135Right-handed alpha
Helix 59
67
4
22 38Right-handed alpha
Helix 60
68
4
63 73Right-handed alpha
Helix 61
69
4
85 88Right-handed alpha
Helix 62
70
4
95 106Right-handed alpha
Helix 63
71
4
158 164Right-handed alpha
Helix 64
72
4
171 180Right-handed alpha
Helix 65
73
4
191 198Right-handed alpha
Helix 66
74
4
201 206Right-handed alpha
Helix 67
75
4
223 231Right-handed alpha
Helix 68
76
4
242 250Right-handed alpha
Helix 69
77
4
256 260Right-handed alpha
Helix 70
78
4
269 273Right-handed alpha
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There are 22 sheets in PDB entry 8QE8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
330 335first strand
Strand 2
B
621 626anti-parallel
Strand 3
B
612 617anti-parallel
Strand 4
B
599 606anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
374 382first strand
Strand 2
B
362 369anti-parallel
Strand 3
B
353 358anti-parallel
Strand 4
B
342 347anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
420 426first strand
Strand 2
B
410 415anti-parallel
Strand 3
B
399 403anti-parallel
Strand 4
B
390 393anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
463 468first strand
Strand 2
B
453 457anti-parallel
Strand 3
B
444 449anti-parallel
Strand 4
B
435 439anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
502 509first strand
Strand 2
B
491 497anti-parallel
Strand 3
B
483 488anti-parallel
Strand 4
B
473 478anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
543 548first strand
Strand 2
B
533 538anti-parallel
Strand 3
B
524 529anti-parallel
Strand 4
B
513 518anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
590 594first strand
Strand 2
B
578 583anti-parallel
Strand 3
B
569 572anti-parallel
Strand 4
B
559 563anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 335first strand
Strand 2
A
621 626anti-parallel
Strand 3
A
612 617anti-parallel
Strand 4
A
599 606anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 382first strand
Strand 2
A
362 369anti-parallel
Strand 3
A
353 358anti-parallel
Strand 4
A
342 347anti-parallel
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There are 1 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 426first strand
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There are 1 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 415first strand
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 403first strand
Strand 2
A
390 393anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
463 468first strand
Strand 2
A
453 457anti-parallel
Strand 3
A
444 449anti-parallel
Strand 4
A
435 439anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
502 509first strand
Strand 2
A
491 497anti-parallel
Strand 3
A
483 488anti-parallel
Strand 4
A
473 478anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
543 548first strand
Strand 2
A
533 538anti-parallel
Strand 3
A
524 529anti-parallel
Strand 4
A
513 518anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
590 594first strand
Strand 2
A
578 583anti-parallel
Strand 3
A
569 572anti-parallel
Strand 4
A
559 563anti-parallel
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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
80 82first strand
Strand 2
1
41 50parallel
Strand 3
1
7 15parallel
Strand 4
1
150 156parallel
Strand 5
1
183 187parallel
Strand 6
1
210 214parallel
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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
80 82first strand
Strand 2
2
41 50parallel
Strand 3
2
7 15parallel
Strand 4
2
150 156parallel
Strand 5
2
183 187parallel
Strand 6
2
210 214parallel
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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
80 82first strand
Strand 2
3
41 50parallel
Strand 3
3
7 15parallel
Strand 4
3
150 156parallel
Strand 5
3
183 187parallel
Strand 6
3
210 214parallel
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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
4
80 82first strand
Strand 2
4
41 50parallel
Strand 3
4
7 15parallel
Strand 4
4
150 156parallel
Strand 5
4
183 187parallel
Strand 6
4
210 214parallel
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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
5
80 82first strand
Strand 2
5
41 50parallel
Strand 3
5
7 15parallel
Strand 4
5
150 156parallel
Strand 5
5
183 187parallel
Strand 6
5
210 214parallel
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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
6
80 82first strand
Strand 2
6
41 50parallel
Strand 3
6
7 15parallel
Strand 4
6
150 156parallel
Strand 5
6
183 187parallel
Strand 6
6
210 214parallel
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